clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF004H17 | Sequence | 401 | 004615 (4) | gb:ATAC016827_1543621 | 2e-18 | Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequenc | |||||
JMSF031K02 | Sequence | 707 | 004615 (4) | gb:ATAC016827_1543621 | 5e-38 | Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequenc | 739 | 004615 (4) | gb:ATAC016827_1543621 | 1e-38 | Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequenc |
JMSF039M09 | Sequence | 699 | 004615 (4) | gb:ATAC016827_1543621 | 1e-44 | Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequenc | 901 | 023867 | gb:ATAC016827_1543621 | 2e-50 | Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequenc |
This contig is upended
. : . : . : . : . : . :
rJMSF031K02- ATACAATGGATAATC
____________________________________________________________
consensus ATACAATGGATAATC
. : . : . : . : . : . :
rJMSF031K02- ACAGAACAAAAATAGTGAAAACTGACAAAGTGATAGATATAGAGGATTAGAAATAAGGAG
____________________________________________________________
consensus ACAGAACAAAAATAGTGAAAACTGACAAAGTGATAGATATAGAGGATTAGAAATAAGGAG
. : . : . : . : . : . :
rJMSF031K02- AATATCTAAATTAGCAAAACACGATAGTTATAAAGAGCATACAAGCTTGCCTTGTGGTGA
JMSF039M09+ CTTGTGGTGA
JMSF031K02+ CTTGTGGTGA
____________________________________________________________
consensus AATATCTAAATTAGCAAAACACGATAGTTATAAAGAGCATACAAGCTTGCCTTGTGGTGA
. : . : . : . : . : . :
rJMSF031K02- AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
JMSF039M09+ AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
JMSF031K02+ AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
____________________________________________________________
consensus AGAACTGCTTTCTTCCGAGCAGTCTTAACATCACCATGCGCTTCTAAGCTAACAAGTAAA
. : . : . : . : . : . :
rJMSF031K02- ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
JMSF039M09+ ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
JMSF031K02+ ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
____________________________________________________________
consensus ATATCCTCTGGTGTTAGCAAAAGCTCTGAACAAAGATTAAGGGCATAAAGGGATTTGTCA
. : . : . : . : . : . :
rJMSF031K02- GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
JMSF039M09+ GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
JMSF031K02+ GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
____________________________________________________________
consensus GAAAGGTGTCTCCTAACAGTTTGATGCCACGAGGATTCTGATGGGTGTACAGATTCTTTG
. : . : . : . : . : . :
rJMSF031K02- TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
JMSF039M09+ TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
JMSF031K02+ TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
____________________________________________________________
consensus TTTCTAATAGAAGAGATAAGTTTCTGCACATTTAGCTGACCAAGCAGTGTTGTAAACCAA
. : . : . : . : . : . :
rJMSF031K02- TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
JMSF039M09+ TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
JMSF031K02+ TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
JMSF004H17+ AAAGCGCCCGCTGAAGCANGAAGCCGCGNCCGGCGACCAAT
____________________________________________________________
consensus TTTTCACGGAGGTTAAGAGAAAGCGCCCGCTGAAGCAAGAAGCCGCGGCCGGCGACCAAT
. : . : . : . : . : . :
rJMSF031K02- GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
JMSF039M09+ GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
JMSF031K02+ GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
JMSF004H17+ GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
____________________________________________________________
consensus GAAGGGACAAAGGGAGCGGCCATGAAGCGCTGAAAGAAATCGACTTGTCCGGGCATGGAA
. : . : . : . : . : . :
rJMSF031K02- AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
JMSF039M09+ AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
JMSF031K02+ AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
JMSF004H17+ AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
____________________________________________________________
consensus AGCCGAGGACTCCGAGAAGCTCCCAAGGGAAGCGGGTCTCCGGGAACCGGCCGTGCCTGA
. : . : . : . : . : . :
rJMSF031K02- CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
JMSF039M09+ CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
JMSF031K02+ CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
JMSF004H17+ CCGTCGAGGGTCACCGGNGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
____________________________________________________________
consensus CCGTCGAGGGTCACCGGCGTCGATAAATCCAAGTCCCAAAACCCTGCAGCGTCCATTGCC
. : . : . : . : . : . :
rJMSF031K02- CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
JMSF039M09+ CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
JMSF031K02+ CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
JMSF004H17+ CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATANTAATCTCTCTGG
____________________________________________________________
consensus CATCTCAGCTTCCTCATCTTTTTCCTCTTCGGCAGATACCCAGAATACTAATCTCTCTGG
. : . : . : . : . : . :
rJMSF031K02- AAGTGACAGAG-ANTAATTCGAATTTAGGAG--GCATTTCATTCTNCCAAA
JMSF039M09+ AAGTGACAGAGAATTAATTCGAATTTAGGAGCTGCATTTCATTCTTCCAAAATTGTGAGA
JMSF031K02+ AAGTGACAGAGAATTAATTCGAATTTAGGAG--GCATTTCATTCTTCCAAAATTGTGAGA
JMSF004H17+ AAGTGACAGAGAATTAATTCGAATTTAGGAGCTGCATTTCATTCTTCCAAAATTGTGAGA
____________________________________________________________
consensus AAGTGACAGAGAATTAATTCGAATTTAGGAG--GCATTTCATTCTTCCAAAATTGTGAGA
. : . : . : . : . : . :
JMSF039M09+ AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTC
JMSF031K02+ AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTCAAATGAAATGGCCAAAGC
JMSF004H17+ AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTCAAATGAAATGGCCAAAGCAACC
____________________________________________________________
consensus AATTTCATGCCTCAGCGGACAGGACGAAGTTGGACTTCAAATGAAATGGCCAAAGCAACC