Previous Contig 004518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003H14Sequence302004518 (2)578012169 (2)gb:AC145811_17445192e-41Oryza sativa chromosome 3 BAC OSJNBb0088L13 genomic sequence, complete sequence.
JMSF020P19Sequence325004518 (2)732012169 (2)gb:AC145811_17445195e-43Oryza sativa chromosome 3 BAC OSJNBb0088L13 genomic sequence, complete sequence.

Alignment

This contig is upended


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JMSF020P19+ CCCNTTTTGTTTTNACNAGTTCNAT
                      ____________________________________________________________
consensus CCCNTTTTGTTTTNACNAGTTCNAT
 
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JMSF020P19+ NAAAAAAAAAAACTTCAACCAAACCAAACTAACAATACAGTAAAAAGGGTTAAAAGGGTC
JMSF003H14+ AAAAAAAAAAACTTCAACCAAACCAAACTAACAATNCAGTAAAAAGGGTTAAAAGGGTC
                      ____________________________________________________________
consensus NAAAAAAAAAAACTTCAACCAAACCAAACTAACAATACAGTAAAAAGGGTTAAAAGGGTC
 
. : . : . : . : . : . :
JMSF020P19+ AGCTTTTCTGAATGAATTGCAGGTGCATATGAGTAAGGCTCCCTCTCTCCCTCCCTCTTT
JMSF003H14+ AGCTTTTCTGAATGAATTGCAGGTGCATATGAGTAAGGCTCCCTCTCTCCCTCCCTCTTT
                      ____________________________________________________________
consensus AGCTTTTCTGAATGAATTGCAGGTGCATATGAGTAAGGCTCCCTCTCTCCCTCCCTCTTT
 
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JMSF020P19+ CACCCTCTACCTAAACATATATGTATAAAATGAGATAAACAAAGAACAGAAACGAGAGCT
JMSF003H14+ CACCCTCTACCTAAACATATATGTATAAAATGAGATAAACAAAGAACAGAAACGAGAGCT
                      ____________________________________________________________
consensus CACCCTCTACCTAAACATATATGTATAAAATGAGATAAACAAAGAACAGAAACGAGAGCT
 
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JMSF020P19+ TTCGAAGGAATTAGGTGCTGGGTATAAAAAAAATCCGAGCTTTTGGAACAAAAGAGAAGA
JMSF003H14+ TTCGAAGGAATTAGGTGCTGGGTATAAAAAAAATCCGAGCTTTTGGAACAAAAGAGAAGA
                      ____________________________________________________________
consensus TTCGAAGGAATTAGGTGCTGGGTATAAAAAAAATCCGAGCTTTTGGAACAAAAGAGAAGA
 
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JMSF020P19+ GAGAATGGAGAAACAGAGGGAAGAAAACCAGAAAGGGAGTTTGGAGAGATAGAGCCGGTC
JMSF003H14+ GAGAATGGAGAAACAGAGGGAAGAAAACCAGAAAGGGAGTTTGGAGAGATAGAGCCGGTC
                      ____________________________________________________________
consensus GAGAATGGAGAAACAGAGGGAAGAAAACCAGAAAGGGAGTTTGGAGAGATAGAGCCGGTC