Previous Contig 004346:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L09Sequence460004346 (2)gb:AY630761_16186531e-14Arabidopsis thaliana hypothetical protein (At1G26090) mRNA, complete cds.749011163 (2)gb:AC079829_17328242e-27Arabidopsis thaliana chromosome 1 BAC F28B23 genomic sequence, complete sequence
JMSF003H11Sequence232004346 (2)747011163 (2)gb:AC079829_17328242e-27Arabidopsis thaliana chromosome 1 BAC F28B23 genomic sequence, complete sequence

Alignment

This contig is upended


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JMSF001L09+ CAGTTCAGAAGATATTCGGCTGTAGGATCTTGGGAATGAA
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consensus CAGTTCAGAAGATATTCGGCTGTAGGATCTTGGGAATGAA
 
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JMSF001L09+ TAACCAAGTACGTTTTGAGCCCTGCCATAGCATAATGCTGAGCAGCGAAAACAGCAGAGG
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consensus TAACCAAGTACGTTTTGAGCCCTGCCATAGCATAATGCTGAGCAGCGAAAACAGCAGAGG
 
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JMSF001L09+ TGGTTTTACCAGAACCGCCTTTACCCAAGAAAGTGACCAATCTGGGTGGCTTATCAGCGG
                      ____________________________________________________________
consensus TGGTTTTACCAGAACCGCCTTTACCCAAGAAAGTGACCAATCTGGGTGGCTTATCAGCGG
 
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JMSF001L09+ CTGAATTAGCGGCAGCTGCCATGGCCAAAGCCCCTTTCTTCCTCCTTGATGGGTTTAGTA
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consensus CTGAATTAGCGGCAGCTGCCATGGCCAAAGCCCCTTTCTTCCTCCTTGATGGGTTTAGTA
 
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JMSF003H11+ GGGAAATCGAGTTTTGGGATTGAAGATGAAGGCAAAAATGGTGTTAGGAGGA
JMSF001L09+ ATGGAGGGGGGAAATCGAGTTTTGGGATTGAAGATGAAGGCAAAAATGGTGTTAGGAGGA
                      ____________________________________________________________
consensus ATGGAGGGGGGAAATCGAGTTTTGGGATTGAAGATGAAGGCAAAAATGGTGTTAGGAGGA
 
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JMSF003H11+ ATTGGGGATTTGAAGAAGAGGAAGAAGCCATAGATTTGCAGTCTAGGAATCGAACGTGAC
JMSF001L09+ ATTGGGGATTTGAAGAAGAGGAAGAAGCCATAGATTTGCAGTCTAGGAATCGAACGTGAC
                      ____________________________________________________________
consensus ATTGGGGATTTGAAGAAGAGGAAGAAGCCATAGATTTGCAGTCTAGGAATCGAACGTGAC
 
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JMSF003H11+ TATGAATTGGTTCCTATTATTCTTTTCTTTTTATCATAAAAATTGATTCTTGAAAGTTTG
JMSF001L09+ TATGAATTGGTTCCTATTATTCTTTTCTTTTTATCATAAAAATTGATTCTTGAAAGTTTG
                      ____________________________________________________________
consensus TATGAATTGGTTCCTATTATTCTTTTCTTTTTATCATAAAAATTGATTCTTGAAAGTTTG
 
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JMSF003H11+ ACAACTCTTTCAATCAAACTCTTTTTGCCTAATTTTATGGAGTGAAGGAATCCAACCATC
JMSF001L09+ ACAACTCTTTCAATCAAACTCTTTTTGCCTAATTTTATGGAGTGAAGGAATCCAACCATC
                      ____________________________________________________________
consensus ACAACTCTTTCAATCAAACTCTTTTTGCCTAATTTTATGGAGTGAAGGAATCCAACCATC