Previous Contig 004344:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS067F09Sequence622004344 (4)gb:BT010457_16404031e-37Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete
JMFS112H07Sequence627004344 (4)gb:BT010457_16404034e-40Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete
JMSF001L06Sequence389004344 (4)696011161 (2)gb:BT010457_16404035e-32Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete
JMSF037C08Sequence644004344 (4)gb:BT010457_16404032e-33Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete 697011161 (2)gb:BT010457_16404031e-32Arabidopsis thaliana ribonuclease II-related protein (At5g02250) mRNA, complete

Alignment

This contig is upended


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JMFS112H07+                       TCATCTCAGCCAGTTCTTCCACTGTAACAGATNTGTTATTTTCAAGAA
JMFS067F09+                                                         GTTATTTTCAAGAA
                      ____________________________________________________________
consensus                         TCATCTCAGCCAGTTCTTCCACTGTAACAGATNTGTTATTTTCAAGAA
 
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JMFS112H07+           GCTCATTCCAAGCGAATTCAAGAAGTGCTGGATCCAAGTTATTATGAGCTTTCTGGACAA
JMFS067F09+           GCTCATTCCAAGCGAATTCAAGAAGTGCTGGATCCAAGTTATTATGAGCTTTCTGGACAA
JMSF037C08+                        GAATTCAAGAAGTGCTGGATCCAAGTTATTATGAGCTTTCTGGACAA
                      ____________________________________________________________
consensus             GCTCATTCCAAGCGAATTCAAGAAGTGCTGGATCCAAGTTATTATGAGCTTTCTGGACAA
 
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JMFS112H07+           AGTTTGATATCTCGATGGGGTCAAAGTTCTCAATTCCAGGAACAATAAAAGTAACTTGCT
JMFS067F09+           AGTTTGATATCTCGATGGGGTCAAAGTTCTCAATTCCAGGAACAATAAAAGTAACTTGCT
JMSF037C08+           AGTTTGATATCTCGATGGGGTCAAAGTTCTCAATTCCAGGAACAATAAAAGTAACTTGCT
                      ____________________________________________________________
consensus             AGTTTGATATCTCGATGGGGTCAAAGTTCTCAATTCCAGGAACAATAAAAGTAACTTGCT
 
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JMFS112H07+           GTGGTTTTATTGAGGTTGTTACACCATTCTGATCTGAGACGGTCCAATTCTTTTTCCCAT
JMFS067F09+           GTGGTTTTATTGAGGTTGTTACACCATTCTGATCTGAGACGGTCCAATTCTTTTTCCCAT
JMSF037C08+           GTGGTTTTATTGAGGTTGTTACACCATTCTGATCTGAGACGGTCCAATTCTTTTTCCCAT
                      ____________________________________________________________
consensus             GTGGTTTTATTGAGGTTGTTACACCATTCTGATCTGAGACGGTCCAATTCTTTTTCCCAT
 
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JMFS112H07+           CAGGTCTAAGAGCAACTGCTAGCAATAGCCTTTCAGAGTCCTTCTTGAACTCTAGCAGCA
JMFS067F09+           CAGGTCTAAGAGCAACTGCTAGCAATAGCCTTTCAGAGTCCTTCTTGAACTCTAGCAGCA
JMSF037C08+           CAGGTCTAAGAGCAACTGCTAGCAATAGCCTTTCAGAGTCCTTCTTGAACTCTAGCAGCA
                      ____________________________________________________________
consensus             CAGGTCTAAGAGCAACTGCTAGCAATAGCCTTTCAGAGTCCTTCTTGAACTCTAGCAGCA
 
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JMFS112H07+           ACCCCTTTCGCATTGCTTGTTTTCCTACTTTATCCTCAAGAAGCTCACTAGTGCTGGTTA
JMFS067F09+           ACCCCTTTCGCATTGCTTGTTTTCCTACTTTATCCTCAAGAAGCTCACTAGTGCTGGTTA
JMSF037C08+           ACCCCTTTCGCATTGCTTGTTTTCCTACTTTATCCTCAAGAAGCTCACTAGTGCTGGTTA
JMSF001L06+                                          ATCCTCAAGAAGCTCACTAGTGCTGGTTA
                      ____________________________________________________________
consensus             ACCCCTTTCGCATTGCTTGTTTTCCTACTTTATCCTCAAGAAGCTCACTAGTGCTGGTTA
 
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JMFS112H07+           ATCCCAATTCGGTAGAAGCACGAATTCTCCCTCGTTTGCGCAAGGAATAGAGCTCTTCTA
JMFS067F09+           ATCCCAATTCGGTAGAAGCACGAATTCTCCCTCGTTTGCGCAAGGAATAGAGCTCTTCTA
JMSF037C08+           ATCCCAATTCGGTAGAAGCACGAATTCCCCCTCGTTTGCGCAAGGAATAGAGCTCTTCTA
JMSF001L06+           ATCCCAATTCGGTAGAAGCACGAATTCTCCCTCGTTTGCGCAAGGAATAGAGCTCTTCTA
                      ____________________________________________________________
consensus             ATCCCAATTCGGTAGAAGCACGAATTCTCCCTCGTTTGCGCAAGGAATAGAGCTCTTCTA
 
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JMFS112H07+           TGACGGTCTCAACCAGGCTTTGCACAGAGTAGCTCCGAGCACCGTCATGGCTGAGAGGAT
JMFS067F09+           TGACGGTCTCAACCAGGCTTTGCACAGAGTAGCTCCGAGCACCGTCATGGCTGAGAGGAT
JMSF037C08+           TGACGGTCTCAACCAGGCTTTGCACAGAGTAGCTCCGAGCACCGTCATGGCTGAGAGGAT
JMSF001L06+           TGACGGTCTCAACCAGGCTTTGCACAGAGTAGCTCCGAGCACCGTCATGGCTGAGAGGAT
                      ____________________________________________________________
consensus             TGACGGTCTCAACCAGGCTTTGCACAGAGTAGCTCCGAGCACCGTCATGGCTGAGAGGAT
 
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JMFS112H07+           AAGGCGTGCAACGGGGAAGCGAGAACCGAGAATGCAATCTTAAGTATCTGTGAAACCGCC
JMFS067F09+           AAGGCGTGCAACGGGGAAGCGAGAACCGAGAATGCAATCTTAAGTATCTGTGAAACCGCC
JMSF037C08+           AAGGCGTGCAACGGGGAAGCGAGAACCGAGAATGCAATCTTAAGTATCTGTGAAACCGCC
JMSF001L06+           AAGGCGTGCAACGGGGAAGCGAGAACCGAGAATGCAATCTTAAGTATCTGTGAAACCGCC
                      ____________________________________________________________
consensus             AAGGCGTGCAACGGGGAAGCGAGAACCGAGAATGCAATCTTAAGTATCTGTGAAACCGCC
 
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JMFS112H07+           GCGTTCTGAGTTGGCGCTGGGGACAACAGCTCCAGAACGTCGGCGCCAGCGGCGGAGGCG
JMFS067F09+           GCGTTCTGAGTTGGCGCTGGGGACAACAGCTCCAGAACGTCGGCGCCAGCGGCGGAGGCG
JMSF037C08+           GCGTTCTGAGTTGGCGCTGGGGACAACAGCTCCAGAACGTCGGCGCCAGCGGCGGAGGCG
JMSF001L06+           GCGTTCTGAGTTGGCGCTGGGGACAACAGCTCCAGAACGTCGGCGCCAGCGGCGGAGGCG
                      ____________________________________________________________
consensus             GCGTTCTGAGTTGGCGCTGGGGACAACAGCTCCAGAACGTCGGCGCCAGCGGCGGAGGCG
 
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JMFS112H07+           ACGCTGCGGAGCGGATAAATATGCAGCTATTCATGGCGC                     
JMFS067F09+           ACGCTGCGGAGCGGATAAATATGCAGCTATTCATGGCGCGGGCTGCCATGTTCGGCGGTT
JMSF037C08+           ACGCTGCGGAGCGGATAAATATGCAGCTATTCATGGCGCGGGCTGCCATGTTCGGCGGTT
JMSF001L06+           ACGCTGCGGAGCGGATAAATATGCAGCTATTCATGGCGCGGGCTGCCATGTTCGGCGGTT
                      ____________________________________________________________
consensus             ACGCTGCGGAGCGGATAAATATGCAGCTATTCATGGCGCGGGCTGCCATGTTCGGCGGTT
 
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JMFS067F09+           ACAACCTA                                                    
JMSF037C08+           ACAACCTATAACTACCTGGTTCAAGAAATTGTTTGGGGTTTGGATTGAGAGAGCC     
JMSF001L06+           ACAACCTATAACTACCTGGTTCAAGAAATTGTTTGGGGTTTGGATTGAGAGAGCCAGTCC
                      ____________________________________________________________
consensus             ACAACCTATAACTACCTGGTTCAAGAAATTGTTTGGGGTTTGGATTGAGAGAGCCAGTCC