Previous Contig 004337:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K15Sequence217004337 (2)642012609 (2)gb:AC107207_17383604e-51Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
JMSF028H16Sequence672004337 (2)pir|B96530|B965306e-37Similar to CCS1 [imported] - Arabidopsis thaliana>gb:AE005173_892873 Arabidopsis722012609 (2)pir|B96530|B965302e-64Similar to CCS1 [imported] - Arabidopsis thaliana>gb:AE005173_892873 Arabidopsis

Alignment

This contig is upended


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JMSF028H16+ GCTACTTTGACT
                      ____________________________________________________________
consensus GCTACTTTGACT
 
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JMSF028H16+ AGGGGTATCTGTGTTGTGTAAGTGCAGGCCATCAGCGATGCTGCTAGAAGAGCCGATGTT
                      ____________________________________________________________
consensus AGGGGTATCTGTGTTGTGTAAGTGCAGGCCATCAGCGATGCTGCTAGAAGAGCCGATGTT
 
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JMSF028H16+ CCTAAGAATATGGGCGATGAAAACATGTGATCGAAGCCAAGAGTGAGAACCCATCTCCAG
                      ____________________________________________________________
consensus CCTAAGAATATGGGCGATGAAAACATGTGATCGAAGCCAAGAGTGAGAACCCATCTCCAG
 
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JMSF028H16+ TTGAAGAACCCAAACAGAGGATGATCTTCGGGGAACTTCTGAAAATAGAAATCTGGAGCC
                      ____________________________________________________________
consensus TTGAAGAACCCAAACAGAGGATGATCTTCGGGGAACTTCTGAAAATAGAAATCTGGAGCC
 
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JMSF028H16+ TCCCCTTGTTCGATGATTGATCCTATGGCCATTAAGCCAGCGAGGGCAAACATCTCAGAT
                      ____________________________________________________________
consensus TCCCCTTGTTCGATGATTGATCCTATGGCCATTAAGCCAGCGAGGGCAAACATCTCAGAT
 
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JMSF028H16+ ATAGCGANGGTCAAACTAGACAGACTCGCCACTACCCTTTTGGGTAATCTCCTCAACAGC
                      ____________________________________________________________
consensus ATAGCGANGGTCAAACTAGACAGACTCGCCACTACCCTTTTGGGTAATCTCCTCAACAGC
 
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JMSF028H16+ CCCAAACCACCAGCTTTACTCTTCTTCGCAGGCGGTGGACCCGTCGGAGAGGCACCATTT
                      ____________________________________________________________
consensus CCCAAACCACCAGCTTTACTCTTCTTCGCAGGCGGTGGACCCGTCGGAGAGGCACCATTT
 
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JMSF028H16+ CCGGCGTCGCCGGCGTCCAAAAGCGTGGGTGCTCCGTCAGATTCCGGCACCCTAATCTTG
                      ____________________________________________________________
consensus CCGGCGTCGCCGGCGTCCAAAAGCGTGGGTGCTCCGTCAGATTCCGGCACCCTAATCTTG
 
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JMSF028H16+ CTGGGCGCACTGTTCTCCTTGGCACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
JMSF001K15+ ACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
                      ____________________________________________________________
consensus CTGGGCGCACTGTTCTCCTTGGCACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
 
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JMSF028H16+ AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
JMSF001K15+ AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
                      ____________________________________________________________
consensus AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
 
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JMSF028H16+ AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
JMSF001K15+ AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
                      ____________________________________________________________
consensus AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
 
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JMSF028H16+ AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC
JMSF001K15+ AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC
                      ____________________________________________________________
consensus AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC