Previous Contig 004045:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012A17Sequence589004045 (12)gb:AB073552_15231892e-80Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.805011204 (10)gb:AB073552_15231893e-92Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMFF028J13Sequence560004045 (12)gb:AB073552_15231898e-75Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.628011204 (10)gb:BT002052_16356556e-60Arabidopsis thaliana t-complex polypeptide 1 homologue (At3g20050) mRNA, complet
JMFF029K01Sequence437004045 (12)gb:AB073552_15231896e-52Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.747011204 (10)gb:BT002052_16356551e-77Arabidopsis thaliana t-complex polypeptide 1 homologue (At3g20050) mRNA, complet
JMFF037N03Sequence597004045 (12)gb:AB073552_15231891e-81Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.762011204 (10)gb:AB073552_15231895e-87Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMFF044A21Sequence628004045 (12)gb:AB073552_15231894e-86Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.582011204 (10)gb:AB073552_15231893e-50Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMFS139C12Sequence627004045 (12)gb:AB073552_15231893e-89Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMFS140B07Sequence623004045 (12)gb:AB073552_15231891e-79Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMSF002F16Sequence264004045 (12)gb:AB073552_15231896e-20Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.769011204 (10)gb:BT002052_16356557e-80Arabidopsis thaliana t-complex polypeptide 1 homologue (At3g20050) mRNA, complet
JMSF019H12Sequence541004045 (12)gb:AB073552_15231891e-71Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.774011204 (10)gb:AB073552_15231893e-92Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMSF021D05Sequence664004045 (12)gb:AB073552_15231892e-93Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.588022970gb:AY632359_16186914e-26Gossypium hirsutum BAC 155C17, complete sequence.
JMSF029G02Sequence661004045 (12)gb:AB073552_15231891e-90Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.755011204 (10)gb:AB073552_15231896e-89Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.
JMSF052C06Sequence664004045 (12)gb:AB073552_15231892e-93Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.896011204 (10)gb:AB073552_1523189e-103Bruguiera sexangula bstcp-1 mRNA for t-complex polypeptide 1, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS139C12+ GCTTGTACTGC
JMFF044A21+ ACTGC
JMSF021D05+ TCGGGCATTAGTCATCTTAACCGCTTGTACTGC
JMSF052C06+ TCGGGCATTAGTCATCTTAACCGCTTGTACTGC
JMSF029G02+ GCTTGTACTGC
                      ____________________________________________________________
consensus TCGGGCATTAGTCATCTTAACCGCTTGTACTGC
 
. : . : . : . : . : . :
JMFS139C12+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMFF044A21+ TTCAACAACCAGGTTGCANAAGAAATCACTGTCACCAGAAATCAACTNTGATGACATGCT
JMSF021D05+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMSF052C06+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMFF012A17+ TCAACTTTGATGACATGCT
JMFF037N03+ ACCAGAAATCAACTTTGATGACATGCT
JMSF029G02+ TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
JMFS140B07+ GAAATCAACTTTGATGACATGCT
                      ____________________________________________________________
consensus TTCAACAACCAGGTTTGCAAAGAAATCACTGTCACCAGAAATCAACTTTGATGACATGCT
 
. : . : . : . : . : . :
JMFS139C12+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF044A21+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF021D05+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF052C06+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF012A17+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF037N03+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF019H12+ TCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFF028J13+ CAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMSF029G02+ TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
JMFS140B07+ TGTCTTGGCACAATNTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
                      ____________________________________________________________
consensus TGTCTTGGCACAATTTATGAGGGAATCCTTTCCAAGTTTTTCAACCTTCACAGCCAGTTT
 
. : . : . : . : . : . :
JMFS139C12+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF044A21+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF021D05+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF052C06+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF012A17+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF037N03+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF019H12+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFF028J13+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMSF029G02+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
JMFS140B07+ CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
                      ____________________________________________________________
consensus CTCTTCAACATACTTACAAGCTTCTCTCATTGCAAGTCTGTATCCACTGATTATTGAAGT
 
. : . : . : . : . : . :
JMFS139C12+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF044A21+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF021D05+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF052C06+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF012A17+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF037N03+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF019H12+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF029K01+ TTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFF028J13+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMSF029G02+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
JMFS140B07+ GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
                      ____________________________________________________________
consensus GGGGTGAATTTTGTTCCGCACCAAGTCATTTGCTCTCTTGAGCAACTCTGCAGCTATGAT
 
. : . : . : . : . : . :
JMFS139C12+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF044A21+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF021D05+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF052C06+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF012A17+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF037N03+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF019H12+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF029K01+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFF028J13+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMSF029G02+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
JMFS140B07+ GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
                      ____________________________________________________________
consensus GACTACAGAAGTAGTTCCATCACCAACTTCCCGGTCTTGAAGCTCCGCCAACTCAACAAG
 
. : . : . : . : . : . :
JMFS139C12+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF044A21+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF021D05+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF052C06+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF012A17+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF037N03+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF019H12+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF029K01+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFF028J13+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMSF029G02+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
JMFS140B07+ AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
                      ____________________________________________________________
consensus AACCTTGGCTGCTGGATGCTCAACTTCTAACATCTTCAGAATAGTAGCACCATCATTTGT
 
. : . : . : . : . : . :
JMFS139C12+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF044A21+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF021D05+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF052C06+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF012A17+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF037N03+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF019H12+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF029K01+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFF028J13+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF002F16+ ACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMSF029G02+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
JMFS140B07+ GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGGCGGGACCAAGTGA
                      ____________________________________________________________
consensus GATTGTTACATCACCAATATCATCAACAAGCATCTTATCGAGCCCGACGGGACCAAGTGA
 
. : . : . : . : . : . :
JMFS139C12+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF044A21+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF021D05+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF052C06+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF012A17+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF037N03+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF019H12+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF029K01+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFF028J13+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF002F16+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMSF029G02+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
JMFS140B07+ CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
                      ____________________________________________________________
consensus CGACTTAACGATGTTTGCCACTGCTTGGCATGCCATTACATTTTGGGTTCGGACATCCTG
 
. : . : . : . : . : . :
JMFS139C12+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF044A21+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF021D05+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF052C06+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF012A17+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF037N03+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF019H12+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF029K01+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFF028J13+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF002F16+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMSF029G02+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
JMFS140B07+ GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
                      ____________________________________________________________
consensus GCCGGACTGCCGTTCGCCGGAAATATCGAGAGTTTGGCCCGCAAGCGCCATCCGTGTGAA
 
. : . : . : . : . : . :
JMFS139C12+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF044A21+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF021D05+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF052C06+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF012A17+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF037N03+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF019H12+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF029K01+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFF028J13+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF002F16+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMSF029G02+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
JMFS140B07+ GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
                      ____________________________________________________________
consensus GATCGAGAGAGTGAGTGTTGGTGGAGACGGTTCTGGAAGGATGGAAAAACCCTGGATCGA
 
. : . : . : . : . : . :
JMFS139C12+ CCTTTGAAAGAAATAA
JMFF044A21+ CCTTTGAAAGAAATAAGCGCTGT
JMSF021D05+ CCTTTGAAAGAAATAAGCGCTGTGTATAC
JMSF052C06+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMFF012A17+ CCTTTGAAAGAAATAAGCGCTGTGTA
JMFF037N03+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF019H12+ CCTTTGAAAGAAATAAGCGCTGTGTATAC
JMFF029K01+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMFF028J13+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF002F16+ CCTTTGAAAGAAATAAGCGCTGTGTATACT
JMSF029G02+ CCTTTGAAAGAAATAAGCGCTGTGTATACTGAAAACCTCGG
JMFS140B07+ CCTTTGAAAGAAATAAGCGCTGTGTATACTGAAAACCTCGGCAGAGCAACTGAGGTTTTT
                      ____________________________________________________________
consensus CCTTTGAAAGAAATAAGCGCTGTGTATACTGAAAACCTCGGCAGAGCAACTGAGGTTTTT