clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF033M06 | Sequence | 574 | 003889 (3) | gb:AY057556_1563973 | 2e-66 | Arabidopsis thaliana At1g27840/F28L5_15 mRNA, complete cds.>gb:AY074265_1567427 | 652 | 009778 (2) | gb:AP005476_1852560 | 2e-37 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJN |
JMFS124G01 | Sequence | 582 | 003889 (3) | gb:AK175747_1817735 | 4e-12 | Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-29-M18.>gb:AK175917_18179 | |||||
JMSF009O12 | Sequence | 213 | 003889 (3) | 381 | 009778 (2) |
This contig is upended
. : . : . : . : . : . :
JMFF033M06+ ACATCTTCAGTTCCAG
____________________________________________________________
consensus ACATCTTCAGTTCCAG
. : . : . : . : . : . :
JMFF033M06+ CAGCAATTAGCATATGAGATGTTGCCAGAGAAGACATGGCAGTCTTATTAACCTTTCCAG
____________________________________________________________
consensus CAGCAATTAGCATATGAGATGTTGCCAGAGAAGACATGGCAGTCTTATTAACCTTTCCAG
. : . : . : . : . : . :
JMFF033M06+ GCATTTTAAAATTAACAACCACCTGTGTTGTGTTTGTGTCCCATACATTAACGCGATGGT
____________________________________________________________
consensus GCATTTTAAAATTAACAACCACCTGTGTTGTGTTTGTGTCCCATACATTAACGCGATGGT
. : . : . : . : . : . :
JMFF033M06+ CATATGAACCAGTGACAAACAGGCCAGTGTCAACTGGATACCATATGGCTGTAGAAACGG
____________________________________________________________
consensus CATATGAACCAGTGACAAACAGGCCAGTGTCAACTGGATACCATATGGCTGTAGAAACGG
. : . : . : . : . : . :
JMFF033M06+ CATATTTGTGGCCCTGTTCATGTCGTTTGTCAACAACAAAAAGGGGCTTATGCTTAGCGA
____________________________________________________________
consensus CATATTTGTGGCCCTGTTCATGTCGTTTGTCAACAACAAAAAGGGGCTTATGCTTAGCGA
. : . : . : . : . : . :
JMFF033M06+ TCAATCCACCTCCCTCATGACCTGTTGCACGTTGGACATCATAAACAGCAACTGATGCAT
____________________________________________________________
consensus TCAATCCACCTCCCTCATGACCTGTTGCACGTTGGACATCATAAACAGCAACTGATGCAT
. : . : . : . : . : . :
JMFF033M06+ CCGAAGCACAGGATAGTAAATACCTTTGCTCTGTCAAATCAACCTGAAGAGAGTTAACGG
JMFS124G01+ AACCTGAAGAGAGTTAACGG
____________________________________________________________
consensus CCGAAGCACAGGATAGTAAATACCTTTGCTCTGTCAAATCAACCTGAAGAGAGTTAACGG
. : . : . : . : . : . :
JMFF033M06+ GGCCGCGGTGAGGGGAGACGATCTCTTTGTGATTGGAGAGCTGAATAGCAGCAAGTCGGT
JMFS124G01+ GGCCGCGGTGAGGGGAGACGATCTCTTTGTGATTGGAGAGCTGAATAGCAGCGAGTCGGT
____________________________________________________________
consensus GGCCGCGGTGAGGGGAGACGATCTCTTTGTGATTGGAGAGCTGAATAGCAGCGAGTCGGT
. : . : . : . : . : . :
JMFF033M06+ TCAACTTAACTCGGTTGCTGTACGAATTAGGTCGAAGTTTCCCTGATTCTCTGTCCCTGA
JMFS124G01+ TCAACTTAACTCGGTTGCTGTACGAATTAGGTCGAAGTTTCCCTGATTCTCTGTCCCTGA
____________________________________________________________
consensus TCAACTTAACTCGGTTGCTGTACGAATTAGGTCGAAGTTTCCCTGATTCTCTGTCCCTGA
. : . : . : . : . : . :
JMFF033M06+ TTTCCTTCCACATCTTCTTCCTCGCATCCTTCCCGGCTTCCACCAACTGCTTAGATCCAC
JMSF009O12+ TTCCACATCTTCTTCCTCGCATCCTTCCCGGCTTCCACCAACTGCTTAGATCCAC
JMFS124G01+ TTTCCTTCCACATCTTCTTCCTCGCATCCTTCCCGGCTTCCACCAACTGCTTAGATCCAC
____________________________________________________________
consensus TTTCCTTCCACATCTTCTTCCTCGCATCCTTCCCGGCTTCCACCAACTGCTTAGATCCAC
. : . : . : . : . : . :
JMFF033M06+ CGCCACAACCGACCAGCC
JMSF009O12+ CGCCACAACCGACCAGCCGGATTCAATTCCCCCCAGCTTCTCTGTATGTATAAGTATAAG
JMFS124G01+ CGCCACAACCGACCAGCCGGATTCAATTCCCCCCAGCTTCTCTGTATGTATAAGTATAAG
____________________________________________________________
consensus CGCCACAACCGACCAGCCGGATTCAATTCCCCCCAGCTTCTCTGTATGTATAAGTATAAG
. : . : . : . : . : . :
JMSF009O12+ TTTTACACCCAACACACAACATATATTGATCTCAATCGCACAGAAATATGCATAAGAAAT
JMFS124G01+ TTTTACACCCAACACACAACATATATTGATCTCAATCGCACAGAAATATGCATAAGAAAT
____________________________________________________________
consensus TTTTACACCCAACACACAACATATATTGATCTCAATCGCACAGAAATATGCATAAGAAAT
. : . : . : . : . : . :
JMSF009O12+ CACAATCGCAAATCTTTTCTCTTCTGCTTTGCCGT
JMFS124G01+ CACAATCGCAAATCTTTTCTCTTCTGCTTTGCCGTCACTGGACTATTTCTCACATTTCAC
____________________________________________________________
consensus CACAATCGCAAATCTTTTCTCTTCTGCTTTGCCGTCACTGGACTATTTCTCACATTTCAC