Previous Contig 003550:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029H13Sequence418001266 (16)gb:AC145396_17444523e-13Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet673003550 (5)pir|T48515|T485157e-38hypothetical protein F15N18.150 - Arabidopsis thaliana>gb:ATF15N18_1548743 Arabi
JMFS082G10Sequence555003550 (5)gb:AC145396_17444523e-10Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet
JMSF004I13Sequence424001266 (16)gb:AC145396_17444526e-06Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet540003550 (5)gb:AC145396_17444524e-26Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet
JMSF018G23Sequence224001266 (16)gb:AC145396_17444522e-07Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet776003550 (5)pir|T48515|T485151e-52hypothetical protein F15N18.150 - Arabidopsis thaliana>gb:ATF15N18_1548743 Arabi
JMSF042L18Sequence775001266 (16)pir|T48515|T485151e-42hypothetical protein F15N18.150 - Arabidopsis thaliana>gb:ATF15N18_1548743 Arabi837003550 (5)gb:AC145396_17444526e-59Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet

Alignment

This contig is upended


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rJMSF042L18+                                            GAAGTTTTGGCAAAGTCACAGTCTTA
                      ____________________________________________________________
consensus                                               GAAGTTTTGGCAAAGTCACAGTCTTA
 
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rJMSF018G23+                                  ATAGCAGTAACATCAACAGCCAAAGGCAT-ACTTCC
rJMSF042L18+          CTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATCAACAGCCAAAGGCATAACTTCC
                      ____________________________________________________________
consensus             CTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATCAACAGCCAAAGGCATAACTTCC
 
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rJMSF018G23+          AAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTTGGCACTAGACAAGCGATTTTTA
rJMSF042L18+          AAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTTGGCACTAGACAAGCGATTTTTA
                      ____________________________________________________________
consensus             AAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTTGGCACTAGACAAGCGATTTTTA
 
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rJMFF029H13+                    GAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
rJMSF018G23+          GATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
rJMSF042L18+          GATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
                      ____________________________________________________________
consensus             GATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
 
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rJMFF029H13+          ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
rJMSF004I13+                                  CAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
rJMSF018G23+          ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTTAAAGCGGAAGGC
rJMSF042L18+          ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
                      ____________________________________________________________
consensus             ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
 
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rJMFF029H13+          CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
rJMSF004I13+          CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
rJMSF018G23+          CTTAGAGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTTGTCTTTGCTTAT
rJMSF042L18+          CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
                      ____________________________________________________________
consensus             CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
 
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rJMFF029H13+          GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGGCCTATGATTCTCTAACGGAC
rJMSF004I13+          GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
rJMSF018G23+          GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACCGAT
rJMSF042L18+          GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
JMFS082G10-             AGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
                      ____________________________________________________________
consensus             GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
 
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rJMFF029H13+          GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
rJMSF004I13+          GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
rJMSF018G23+          GACTTCAGTTATGCTCTGCTTCTCCTTACCATTGTTGCACTTGTAGTCGCTATTTTCATA
rJMSF042L18+          GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
JMFS082G10-           GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
                      ____________________________________________________________
consensus             GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
 
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rJMFF029H13+          ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
rJMSF004I13+          ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGN
rJMSF018G23+          ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
rJMSF042L18+          ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
JMFS082G10-           ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
                      ____________________________________________________________
consensus             ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
 
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rJMFF029H13+          GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
rJMSF004I13+          GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
rJMSF018G23+          GAGGTGACATCCTCGATTTTTTAATCCTCCTGTATTTTACATAATCTGTTTTGTCCCTTC
rJMSF042L18+          GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
JMFS082G10-           GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
                      ____________________________________________________________
consensus             GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
 
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rJMFF029H13+          CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
rJMSF004I13+          CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
rJMSF018G23+          CATACACAATCATTGCCCTCCTGTGGAAGAACTAGGCGAGC-------------ATTTTA
rJMSF042L18+          CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
JMFS082G10-           CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
                      ____________________________________________________________
consensus             CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
 
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rJMFF029H13+          AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
rJMSF004I13+          AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
rJMSF018G23+          AGTCTGGTCAGTTTACTACCCAAAAATAGTAGTATAGCTTTAGGTGATTTTATTGGGAAG
rJMSF042L18+          AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
JMFS082G10-           AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
                      ____________________________________________________________
consensus             AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
 
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rJMFF029H13+          GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCGGCAAGTAGCAAATGTT
rJMSF004I13+          GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
rJMSF018G23+          GGCAAGAGAAACAGGTTTATGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
rJMSF042L18+          GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
JMFS082G10-           GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
                      ____________________________________________________________
consensus             GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
 
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rJMFF029H13+          TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
rJMSF004I13+          TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAAT              
rJMSF018G23+          TATGACGAGCACTTATGGTTGACATTGAAATTATA                         
rJMSF042L18+          TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
JMFS082G10-           TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
                      ____________________________________________________________
consensus             TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
 
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rJMFF029H13+          AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCAC               
rJMSF042L18+          AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACT              
JMFS082G10-           AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT
                      ____________________________________________________________
consensus             AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT