clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF029H13 | Sequence | 418 | 001266 (16) | gb:AC145396_1744452 | 3e-13 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet | 673 | 003550 (5) | pir|T48515|T48515 | 7e-38 | hypothetical protein F15N18.150 - Arabidopsis thaliana>gb:ATF15N18_1548743 Arabi |
JMFS082G10 | Sequence | 555 | 003550 (5) | gb:AC145396_1744452 | 3e-10 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet | |||||
JMSF004I13 | Sequence | 424 | 001266 (16) | gb:AC145396_1744452 | 6e-06 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet | 540 | 003550 (5) | gb:AC145396_1744452 | 4e-26 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet |
JMSF018G23 | Sequence | 224 | 001266 (16) | gb:AC145396_1744452 | 2e-07 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet | 776 | 003550 (5) | pir|T48515|T48515 | 1e-52 | hypothetical protein F15N18.150 - Arabidopsis thaliana>gb:ATF15N18_1548743 Arabi |
JMSF042L18 | Sequence | 775 | 001266 (16) | pir|T48515|T48515 | 1e-42 | hypothetical protein F15N18.150 - Arabidopsis thaliana>gb:ATF15N18_1548743 Arabi | 837 | 003550 (5) | gb:AC145396_1744452 | 6e-59 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complet |
This contig is upended
. : . : . : . : . : . :
rJMSF042L18+ GAAGTTTTGGCAAAGTCACAGTCTTA
____________________________________________________________
consensus GAAGTTTTGGCAAAGTCACAGTCTTA
. : . : . : . : . : . :
rJMSF018G23+ ATAGCAGTAACATCAACAGCCAAAGGCAT-ACTTCC
rJMSF042L18+ CTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATCAACAGCCAAAGGCATAACTTCC
____________________________________________________________
consensus CTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATCAACAGCCAAAGGCATAACTTCC
. : . : . : . : . : . :
rJMSF018G23+ AAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTTGGCACTAGACAAGCGATTTTTA
rJMSF042L18+ AAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTTGGCACTAGACAAGCGATTTTTA
____________________________________________________________
consensus AAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTTGGCACTAGACAAGCGATTTTTA
. : . : . : . : . : . :
rJMFF029H13+ GAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
rJMSF018G23+ GATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
rJMSF042L18+ GATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
____________________________________________________________
consensus GATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAAAGAGGATGGAATAATACCTCTT
. : . : . : . : . : . :
rJMFF029H13+ ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
rJMSF004I13+ CAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
rJMSF018G23+ ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTTAAAGCGGAAGGC
rJMSF042L18+ ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
____________________________________________________________
consensus ACTGATTCTTTACCTATAATCCCACAGTCTTATGTGACTCATGCTGTAAAAGCAGAAGGC
. : . : . : . : . : . :
rJMFF029H13+ CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
rJMSF004I13+ CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
rJMSF018G23+ CTTAGAGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTTGTCTTTGCTTAT
rJMSF042L18+ CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
____________________________________________________________
consensus CTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTCCACCACCCTCGTCTTTGCTTAT
. : . : . : . : . : . :
rJMFF029H13+ GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGGCCTATGATTCTCTAACGGAC
rJMSF004I13+ GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
rJMSF018G23+ GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACCGAT
rJMSF042L18+ GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
JMFS082G10- AGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
____________________________________________________________
consensus GGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAAGACCTATGATTCTCTAACGGAC
. : . : . : . : . : . :
rJMFF029H13+ GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
rJMSF004I13+ GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
rJMSF018G23+ GACTTCAGTTATGCTCTGCTTCTCCTTACCATTGTTGCACTTGTAGTCGCTATTTTCATA
rJMSF042L18+ GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
JMFS082G10- GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
____________________________________________________________
consensus GACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGCACTTGTAGTGGCTATTTTCATA
. : . : . : . : . : . :
rJMFF029H13+ ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
rJMSF004I13+ ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGN
rJMSF018G23+ ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
rJMSF042L18+ ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
JMFS082G10- ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
____________________________________________________________
consensus ACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAAGTGGAGATGAGTTGAATCAGGT
. : . : . : . : . : . :
rJMFF029H13+ GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
rJMSF004I13+ GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
rJMSF018G23+ GAGGTGACATCCTCGATTTTTTAATCCTCCTGTATTTTACATAATCTGTTTTGTCCCTTC
rJMSF042L18+ GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
JMFS082G10- GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
____________________________________________________________
consensus GAGGTGAC--------------AATCCTCCTGTATTTTACCTAATCTGTTTTGTCCCTTC
. : . : . : . : . : . :
rJMFF029H13+ CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
rJMSF004I13+ CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
rJMSF018G23+ CATACACAATCATTGCCCTCCTGTGGAAGAACTAGGCGAGC-------------ATTTTA
rJMSF042L18+ CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
JMFS082G10- CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
____________________________________________________________
consensus CATACAC----ATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTATTTTA
. : . : . : . : . : . :
rJMFF029H13+ AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
rJMSF004I13+ AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
rJMSF018G23+ AGTCTGGTCAGTTTACTACCCAAAAATAGTAGTATAGCTTTAGGTGATTTTATTGGGAAG
rJMSF042L18+ AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
JMFS082G10- AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
____________________________________________________________
consensus AGTCTGGTCAGTTTACTACCC--AAATAGTAGT--AGCTTTAGGTGATTTTATTTGGAAG
. : . : . : . : . : . :
rJMFF029H13+ GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCGGCAAGTAGCAAATGTT
rJMSF004I13+ GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
rJMSF018G23+ GGCAAGAGAAACAGGTTTATGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
rJMSF042L18+ GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
JMFS082G10- GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
____________________________________________________________
consensus GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
. : . : . : . : . : . :
rJMFF029H13+ TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
rJMSF004I13+ TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAAT
rJMSF018G23+ TATGACGAGCACTTATGGTTGACATTGAAATTATA
rJMSF042L18+ TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
JMFS082G10- TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
____________________________________________________________
consensus TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
. : . : . : . : . : . :
rJMFF029H13+ AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCAC
rJMSF042L18+ AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACT
JMFS082G10- AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT
____________________________________________________________
consensus AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT