Previous Contig 003400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002H07Sequence566003670 (18)pir|T01385|T013858e-39probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana>751003400 (9)gb:FSY298828_16794122e-22Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).
JMFF006J23Sequence236003670 (18)767003400 (9)gb:FSY298828_16794121e-52Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).
JMFF014J24Sequence512003670 (18)pir|T01385|T013851e-24probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana>688003400 (9)gb:FSY298828_16794129e-12Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).
JMFN029C22Sequence103003400 (9)
JMFS065H09Sequence624003400 (9)
JMSF008M17Sequence748003400 (9)gb:FSY298828_16794124e-54Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).
JMSF012M20Sequence514003670 (18)pir|T01385|T013853e-36probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana>748003400 (9)gb:FSY298828_16794124e-54Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).
JMSF038P17Sequence662003670 (18)pir|T01385|T013857e-49probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana>863003400 (9)gb:FSY298828_16794123e-55Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).
JMSF050H22Sequence663003670 (18)pir|T01385|T013853e-71probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana>751003400 (9)gb:FSY298828_16794124e-54Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene).

Alignment

This contig is upended


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rJMSF038P17+                                                                GTCTGA
                      ____________________________________________________________
consensus                                                                   GTCTGA
 
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rJMFF006J23+                GGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF050H22+           CCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF012M20+           CCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF008M17+           CCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF038P17+          TCCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
                      ____________________________________________________________
consensus             TCCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
 
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rJMFF006J23+          GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF050H22+          GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF012M20+          GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF008M17+          GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF038P17+          GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
                      ____________________________________________________________
consensus             GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
 
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rJMFF006J23+          AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF050H22+          AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF012M20+          AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF008M17+          AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF038P17+          AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMFF002H07+                 CATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
                      ____________________________________________________________
consensus             AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
 
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rJMFF006J23+          ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF050H22+          ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF012M20+          ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF008M17+          ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF038P17+          ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMFF002H07+          ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMFF014J24+                      TACTAACTATTGTGGAACTGCCAAGAATGNTGGTGCAATACTGGTAGT
                      ____________________________________________________________
consensus             ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
 
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rJMFF006J23+          TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF050H22+          TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF012M20+          TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF008M17+          TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF038P17+          TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMFF002H07+          TGGGAGAGGACTTGTTATAGTTCNTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMFF014J24+          TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCNTCTTCTAT
JMFS065H09-                                             CATCCATGTGTCTTCATTGACCCGTT
                      ____________________________________________________________
consensus             TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
 
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rJMFF006J23+          CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF050H22+          CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF012M20+          CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF008M17+          CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF038P17+          CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMFF002H07+          CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMFF014J24+          CCCCAGATACATNTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
JMFS065H09-           CTGGAGATGTATCTGGGGATAGAAGAGGCGGTGGCA-ATGGATGCAGGAACTAAACATTC
                      ____________________________________________________________
consensus             CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
 
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rJMFF006J23+          AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF050H22+          AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF012M20+          AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF008M17+          AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF038P17+          AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMFF002H07+          AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMFF014J24+          AACGACCACNTACCCNTACTCGTGGTCGCCCTCAGCCTGACNTAGACCGGAACTCACTCG
JMFN029C22+                                            AGCCTGACCTAGACCGGAACTCACTCG
JMFS065H09-           AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
                      ____________________________________________________________
consensus             AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
 
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rJMFF006J23+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF050H22+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF012M20+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF008M17+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF038P17+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMFF002H07+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMFF014J24+          CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
JMFN029C22+           CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGA   
JMFS065H09-           CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
                      ____________________________________________________________
consensus             CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
 
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rJMFF006J23+          GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF050H22+          GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF012M20+          GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF008M17+          GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF038P17+          GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMFF002H07+          GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMFF014J24+          GACAAATTCCTTTNTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
JMFS065H09-           GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
                      ____________________________________________________________
consensus             GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
 
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rJMFF006J23+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF050H22+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF012M20+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF008M17+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF038P17+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMFF002H07+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMFF014J24+          CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
JMFS065H09-           CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
                      ____________________________________________________________
consensus             CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
 
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rJMFF006J23+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF050H22+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF012M20+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF008M17+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF038P17+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMFF002H07+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMFF014J24+          ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
JMFS065H09-           ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
                      ____________________________________________________________
consensus             ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
 
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rJMFF006J23+          GTGTCGTGTCGAGTGGGGNTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF050H22+          GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF012M20+          GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF008M17+          GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF038P17+          GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMFF002H07+          GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMFF014J24+          GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
JMFS065H09-           GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
                      ____________________________________________________________
consensus             GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
 
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rJMFF006J23+          TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATA     
rJMSF050H22+          TGTGGAA-CTGATTGATTTGTATTGCGAAGTATA                          
rJMSF012M20+          TGTGGAA-CTGATTGATTTGTATTGCGAAGT                             
rJMSF008M17+          TGTGGAACCTGATTGATTTGTATTGCGAAG                              
rJMSF038P17+          TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
rJMFF002H07+          TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
rJMFF014J24+          TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
JMFS065H09-           TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
                      ____________________________________________________________
consensus             TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
 
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rJMSF038P17+          ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
rJMFF002H07+          ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
rJMFF014J24+          ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
JMFS065H09-           ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
                      ____________________________________________________________
consensus             ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
 
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rJMSF038P17+          ATGTAATCTTATATTGGGT                                         
rJMFF002H07+          ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAAT                    
rJMFF014J24+          ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAAT                    
JMFS065H09-           ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAATTTATCAATTTTCAACAATCT
                      ____________________________________________________________
consensus             ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAATTTATCAATTTTCAACAATCT