clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002H07 | Sequence | 566 | 003670 (18) | pir|T01385|T01385 | 8e-39 | probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana> | 751 | 003400 (9) | gb:FSY298828_1679412 | 2e-22 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). |
JMFF006J23 | Sequence | 236 | 003670 (18) | 767 | 003400 (9) | gb:FSY298828_1679412 | 1e-52 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). | |||
JMFF014J24 | Sequence | 512 | 003670 (18) | pir|T01385|T01385 | 1e-24 | probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana> | 688 | 003400 (9) | gb:FSY298828_1679412 | 9e-12 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). |
JMFN029C22 | Sequence | 103 | 003400 (9) | ||||||||
JMFS065H09 | Sequence | 624 | 003400 (9) | ||||||||
JMSF008M17 | Sequence | 748 | 003400 (9) | gb:FSY298828_1679412 | 4e-54 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). | |||||
JMSF012M20 | Sequence | 514 | 003670 (18) | pir|T01385|T01385 | 3e-36 | probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana> | 748 | 003400 (9) | gb:FSY298828_1679412 | 4e-54 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). |
JMSF038P17 | Sequence | 662 | 003670 (18) | pir|T01385|T01385 | 7e-49 | probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana> | 863 | 003400 (9) | gb:FSY298828_1679412 | 3e-55 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). |
JMSF050H22 | Sequence | 663 | 003670 (18) | pir|T01385|T01385 | 3e-71 | probable phosphoprotein phosphatase (EC 3.1.3.16) T4I9.4 - Arabidopsis thaliana> | 751 | 003400 (9) | gb:FSY298828_1679412 | 4e-54 | Fagus sylvatica partial mRNA for protein phosphatase (pp1-1 gene). |
This contig is upended
. : . : . : . : . : . :
rJMSF038P17+ GTCTGA
____________________________________________________________
consensus GTCTGA
. : . : . : . : . : . :
rJMFF006J23+ GGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF050H22+ CCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF012M20+ CCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF008M17+ CCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
rJMSF038P17+ TCCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
____________________________________________________________
consensus TCCCACGGAAAATGATAGTGTAGAAGGATTGAGACCGAATGCAAGAGGGCCTGGTCTTGT
. : . : . : . : . : . :
rJMFF006J23+ GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF050H22+ GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF012M20+ GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF008M17+ GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
rJMSF038P17+ GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
____________________________________________________________
consensus GACCTTTGGGCCTGATCGTGTTACAGATTTCTGTAAGAGGAATAAATTGCAATTAATAAT
. : . : . : . : . : . :
rJMFF006J23+ AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF050H22+ AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF012M20+ AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF008M17+ AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMSF038P17+ AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
rJMFF002H07+ CATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
____________________________________________________________
consensus AAGAGCACATGAGTGTGTTATGGATGGATTTGAACGTTTTGCCCAGGGGCAGTTGATCAC
. : . : . : . : . : . :
rJMFF006J23+ ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF050H22+ ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF012M20+ ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF008M17+ ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMSF038P17+ ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMFF002H07+ ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
rJMFF014J24+ TACTAACTATTGTGGAACTGCCAAGAATGNTGGTGCAATACTGGTAGT
____________________________________________________________
consensus ACTATTTTCTGCTACTAACTATTGTGGAACTGCCAATAATGCTGGTGCAATACTGGTAGT
. : . : . : . : . : . :
rJMFF006J23+ TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF050H22+ TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF012M20+ TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF008M17+ TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMSF038P17+ TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMFF002H07+ TGGGAGAGGACTTGTTATAGTTCNTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
rJMFF014J24+ TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCNTCTTCTAT
JMFS065H09- CATCCATGTGTCTTCATTGACCCGTT
____________________________________________________________
consensus TGGGAGAGGACTTGTTATAGTTCCTAAATTGATTCATCCAT-TGCCACCGCCTCTTCTAT
. : . : . : . : . : . :
rJMFF006J23+ CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF050H22+ CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF012M20+ CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF008M17+ CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMSF038P17+ CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMFF002H07+ CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
rJMFF014J24+ CCCCAGATACATNTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
JMFS065H09- CTGGAGATGTATCTGGGGATAGAAGAGGCGGTGGCA-ATGGATGCAGGAACTAAACATTC
____________________________________________________________
consensus CCCCAGATACATCTCCAGAACGGGTCAATGAAGACACATGGATGCAGGAACTAAACATTC
. : . : . : . : . : . :
rJMFF006J23+ AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF050H22+ AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF012M20+ AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF008M17+ AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMSF038P17+ AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMFF002H07+ AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
rJMFF014J24+ AACGACCACNTACCCNTACTCGTGGTCGCCCTCAGCCTGACNTAGACCGGAACTCACTCG
JMFN029C22+ AGCCTGACCTAGACCGGAACTCACTCG
JMFS065H09- AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
____________________________________________________________
consensus AACGACCACCTACCCCTACTCGTGGTCGCCCTCAGCCTGACCTAGACCGGAACTCACTCG
. : . : . : . : . : . :
rJMFF006J23+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF050H22+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF012M20+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF008M17+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMSF038P17+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMFF002H07+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
rJMFF014J24+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
JMFN029C22+ CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGA
JMFS065H09- CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
____________________________________________________________
consensus CTTATATATGAGCGGGCATTTCATTGAATACAAGTTCCAATATTCTCCCATTCAGGATTT
. : . : . : . : . : . :
rJMFF006J23+ GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF050H22+ GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF012M20+ GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF008M17+ GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMSF038P17+ GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMFF002H07+ GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
rJMFF014J24+ GACAAATTCCTTTNTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
JMFS065H09- GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
____________________________________________________________
consensus GACAAATTCCTTTCTGAATGGCACATCGTTACAGTTTCAAAGGGAAGTAGTGAAATTGAC
. : . : . : . : . : . :
rJMFF006J23+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF050H22+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF012M20+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF008M17+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMSF038P17+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMFF002H07+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
rJMFF014J24+ CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
JMFS065H09- CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
____________________________________________________________
consensus CATATAATGCCATACGAGTAAAAGAACTATTTTATGTTTCGCAAATACAGTTGAGCGGCC
. : . : . : . : . : . :
rJMFF006J23+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF050H22+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF012M20+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF008M17+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMSF038P17+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMFF002H07+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
rJMFF014J24+ ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
JMFS065H09- ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
____________________________________________________________
consensus ATGCATGAGTTCTGCGTTGTGAACATAGATAGTGAGATGCAGAAGATGGCAGCTAAGATT
. : . : . : . : . : . :
rJMFF006J23+ GTGTCGTGTCGAGTGGGGNTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF050H22+ GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF012M20+ GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF008M17+ GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMSF038P17+ GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMFF002H07+ GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
rJMFF014J24+ GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
JMFS065H09- GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
____________________________________________________________
consensus GTGTCGTGTCGAGTGGGGTTGAGTTGTGTATTTCTATTGTAAAAAGCAATAGGTTTTACT
. : . : . : . : . : . :
rJMFF006J23+ TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATA
rJMSF050H22+ TGTGGAA-CTGATTGATTTGTATTGCGAAGTATA
rJMSF012M20+ TGTGGAA-CTGATTGATTTGTATTGCGAAGT
rJMSF008M17+ TGTGGAACCTGATTGATTTGTATTGCGAAG
rJMSF038P17+ TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
rJMFF002H07+ TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
rJMFF014J24+ TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
JMFS065H09- TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
____________________________________________________________
consensus TGTGGAA-CTGATTGATTTGTATTGCGAAGTATATGTTGTTTTAATATTAATATATTATT
. : . : . : . : . : . :
rJMSF038P17+ ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
rJMFF002H07+ ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
rJMFF014J24+ ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
JMFS065H09- ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
____________________________________________________________
consensus ATATGCACAGAGATGAATAGCCAATGCCATTGATTCAGAGTCTTAGTTTTGGAAGATGTA
. : . : . : . : . : . :
rJMSF038P17+ ATGTAATCTTATATTGGGT
rJMFF002H07+ ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAAT
rJMFF014J24+ ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAAT
JMFS065H09- ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAATTTATCAATTTTCAACAATCT
____________________________________________________________
consensus ATGTAATCTTATATTGGGTTGCTTCCCTAGCTAACGAAATTTATCAATTTTCAACAATCT