Previous Contig 003359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015P01Sequence569007751 (2)gb:MTR430608_16876525e-23Medicago truncatula mRNA for squalene monooxygenase 2 (sqp2 gene).663003359 (3)gb:MTR430608_16876528e-60Medicago truncatula mRNA for squalene monooxygenase 2 (sqp2 gene).
JMFS059E04Sequence514003359 (3)gb:AC135157_17419932e-30Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11, complete se
JMSF046O16Sequence641007751 (2)gb:MTR430608_16876527e-56Medicago truncatula mRNA for squalene monooxygenase 2 (sqp2 gene).118003359 (3)gb:MTR430609_16876534e-07Medicago truncatula mRNA for squalene monooxygenase 1 (sqp1 gene).

Alignment

This contig is upended


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rJMFF015P01+                                                    ACGATGCACCCCACTCTC
                      ____________________________________________________________
consensus                                                       ACGATGCACCCCACTCTC
 
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rJMFF015P01+          TGCAAATATTTGGAATCTTTTTACACCTTGCGGAAGCCCGTGGCATCGACCATCAATACA
                      ____________________________________________________________
consensus             TGCAAATATTTGGAATCTTTTTACACCTTGCGGAAGCCCGTGGCATCGACCATCAATACA
 
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rJMFF015P01+          TTGGCAGGTGCACTTTACAAAGTGTTTTGCGCCTCGCCCGATCAAGCAAGGAAAGAAATG
                      ____________________________________________________________
consensus             TTGGCAGGTGCACTTTACAAAGTGTTTTGCGCCTCGCCCGATCAAGCAAGGAAAGAAATG
 
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rJMFF015P01+          CGGCAGGCGTGCTTCGATTACTTGAGCCTCGGAGGGGTTTTCTCGAACGGCCCCGTGTCT
JMFS059E04-                                     CCTCGGAGGGGTTTTCTCGAACGGCCCCGTGTCT
                      ____________________________________________________________
consensus             CGGCAGGCGTGCTTCGATTACTTGAGCCTCGGAGGGGTTTTCTCGAACGGCCCCGTGTCT
 
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rJMFF015P01+          CTGCTCTCCGGGTTGAACCCTCGACCACTGAGCCTCGTCTGCCATTTCTTTGCTGTTGCA
JMFS059E04-           CTGCTCTCCGGGTTGAACCCTCGACCACTGAGCCTCGTCTGCCATTTCTTTGCTGTTGCA
                      ____________________________________________________________
consensus             CTGCTCTCCGGGTTGAACCCTCGACCACTGAGCCTCGTCTGCCATTTCTTTGCTGTTGCA
 
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rJMFF015P01+          ATCTATGGCGTGGGGCGTTTGCTGCTGCCTTTCCCCTCGCTCAAACGGATGTGGATCGGA
rJMSF046O16+                                                         GATGNGGATCGGN
JMFS059E04-           ATCTATGGCGTGGGGCGTTTGCTGCTGCCTTTCCCCTCGCTCAAACGGATGTGGATCGGA
                      ____________________________________________________________
consensus             ATCTATGGCGTGGGGCGTTTGCTGCTGCCTTTCCCCTCGCTCAAACGGATGTGGATCGGA
 
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rJMFF015P01+          GCAAGATTAATCTCGAGTGCATCGGCCATCATCCTCCCCATCATCAAGGCAGAAGGAGTT
rJMSF046O16+          GCAAGANTAATCTNGAGTGCATCGNCCATCATCCTCNCCATCATCANGGCAGAAGGAGTN
JMFS059E04-           GCAAGATTAATCTCGAGTGCATCGGCCATCATCCTCCCCATCATCAAGGCAGAAGGAGTT
                      ____________________________________________________________
consensus             GCAAGATTAATCTCGAGTGCATCGGCCATCATCCTCCCCATCATCAAGGCAGAAGGAGTT
 
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rJMFF015P01+          AGGCAGATGTTCTTCCCGGCGACTGTTCCGGCATATTACAGAGCTCCTCCTGCGTCCTGC
rJMSF046O16+          AGNCAGATGTTNTTCCCGGCGACTGTTCCGGCATATTACAGAGCT               
JMFS059E04-           AGGCAGATGTTCTTCCCGGCGACTGTTCCGGCATATTACAGAGCTCCTCCTGCGTCCTGC
                      ____________________________________________________________
consensus             AGGCAGATGTTCTTCCCGGCGACTGTTCCGGCATATTACAGAGCTCCTCCTGCGTCCTGC
 
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rJMFF015P01+          TAAATCAAAGCGGCGGCCGGCCGCGGGGATATATGCTTCCATTCAACAAATATATTATTG
JMFS059E04-           TAAATCAAAGCGGCGGCCGGCCGCGGGGATATATGCTTCCATTCAACAAATATATTATTG
                      ____________________________________________________________
consensus             TAAATCAAAGCGGCGGCCGGCCGCGGGGATATATGCTTCCATTCAACAAATATATTATTG
 
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rJMFF015P01+          TATCTCTAATTTGTCTCTTTCTCCACTTTTGTTCATTAACTTCAAGTAAATATTGTGCAC
JMFS059E04-           TATCTCTAATTTGTCTCTTTCTCCACTTTTGTTCATTAACTTCAAGTAAATATTGTGCAC
                      ____________________________________________________________
consensus             TATCTCTAATTTGTCTCTTTCTCCACTTTTGTTCATTAACTTCAAGTAAATATTGTGCAC
 
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rJMFF015P01+          AACATTTATAGATTCCTGTCTCATGTACTCTCCAGCATCAATCTTTTACAGATTACTATG
JMFS059E04-           AACATTTATAGATTCCTGTCTCATGTACTCTCCAGCATCAATCTTTTACAGATTACTATG
                      ____________________________________________________________
consensus             AACATTTATAGATTCCTGTCTCATGTACTCTCCAGCATCAATCTTTTACAGATTACTATG
 
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rJMFF015P01+          GCGATGTAATGTAAACTGTCAATTACTTCCTATGATTAAAATATA               
JMFS059E04-           GCGATGTAATGTAAACTGTCAATTACTTCCTATGATTAAAATATACTCCGTAGTTTAGAA
                      ____________________________________________________________
consensus             GCGATGTAATGTAAACTGTCAATTACTTCCTATGATTAAAATATACTCCGTAGTTTAGAA