clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF015P01 | Sequence | 569 | 007751 (2) | gb:MTR430608_1687652 | 5e-23 | Medicago truncatula mRNA for squalene monooxygenase 2 (sqp2 gene). | 663 | 003359 (3) | gb:MTR430608_1687652 | 8e-60 | Medicago truncatula mRNA for squalene monooxygenase 2 (sqp2 gene). |
JMFS059E04 | Sequence | 514 | 003359 (3) | gb:AC135157_1741993 | 2e-30 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11, complete se | |||||
JMSF046O16 | Sequence | 641 | 007751 (2) | gb:MTR430608_1687652 | 7e-56 | Medicago truncatula mRNA for squalene monooxygenase 2 (sqp2 gene). | 118 | 003359 (3) | gb:MTR430609_1687653 | 4e-07 | Medicago truncatula mRNA for squalene monooxygenase 1 (sqp1 gene). |
This contig is upended
. : . : . : . : . : . :
rJMFF015P01+ ACGATGCACCCCACTCTC
____________________________________________________________
consensus ACGATGCACCCCACTCTC
. : . : . : . : . : . :
rJMFF015P01+ TGCAAATATTTGGAATCTTTTTACACCTTGCGGAAGCCCGTGGCATCGACCATCAATACA
____________________________________________________________
consensus TGCAAATATTTGGAATCTTTTTACACCTTGCGGAAGCCCGTGGCATCGACCATCAATACA
. : . : . : . : . : . :
rJMFF015P01+ TTGGCAGGTGCACTTTACAAAGTGTTTTGCGCCTCGCCCGATCAAGCAAGGAAAGAAATG
____________________________________________________________
consensus TTGGCAGGTGCACTTTACAAAGTGTTTTGCGCCTCGCCCGATCAAGCAAGGAAAGAAATG
. : . : . : . : . : . :
rJMFF015P01+ CGGCAGGCGTGCTTCGATTACTTGAGCCTCGGAGGGGTTTTCTCGAACGGCCCCGTGTCT
JMFS059E04- CCTCGGAGGGGTTTTCTCGAACGGCCCCGTGTCT
____________________________________________________________
consensus CGGCAGGCGTGCTTCGATTACTTGAGCCTCGGAGGGGTTTTCTCGAACGGCCCCGTGTCT
. : . : . : . : . : . :
rJMFF015P01+ CTGCTCTCCGGGTTGAACCCTCGACCACTGAGCCTCGTCTGCCATTTCTTTGCTGTTGCA
JMFS059E04- CTGCTCTCCGGGTTGAACCCTCGACCACTGAGCCTCGTCTGCCATTTCTTTGCTGTTGCA
____________________________________________________________
consensus CTGCTCTCCGGGTTGAACCCTCGACCACTGAGCCTCGTCTGCCATTTCTTTGCTGTTGCA
. : . : . : . : . : . :
rJMFF015P01+ ATCTATGGCGTGGGGCGTTTGCTGCTGCCTTTCCCCTCGCTCAAACGGATGTGGATCGGA
rJMSF046O16+ GATGNGGATCGGN
JMFS059E04- ATCTATGGCGTGGGGCGTTTGCTGCTGCCTTTCCCCTCGCTCAAACGGATGTGGATCGGA
____________________________________________________________
consensus ATCTATGGCGTGGGGCGTTTGCTGCTGCCTTTCCCCTCGCTCAAACGGATGTGGATCGGA
. : . : . : . : . : . :
rJMFF015P01+ GCAAGATTAATCTCGAGTGCATCGGCCATCATCCTCCCCATCATCAAGGCAGAAGGAGTT
rJMSF046O16+ GCAAGANTAATCTNGAGTGCATCGNCCATCATCCTCNCCATCATCANGGCAGAAGGAGTN
JMFS059E04- GCAAGATTAATCTCGAGTGCATCGGCCATCATCCTCCCCATCATCAAGGCAGAAGGAGTT
____________________________________________________________
consensus GCAAGATTAATCTCGAGTGCATCGGCCATCATCCTCCCCATCATCAAGGCAGAAGGAGTT
. : . : . : . : . : . :
rJMFF015P01+ AGGCAGATGTTCTTCCCGGCGACTGTTCCGGCATATTACAGAGCTCCTCCTGCGTCCTGC
rJMSF046O16+ AGNCAGATGTTNTTCCCGGCGACTGTTCCGGCATATTACAGAGCT
JMFS059E04- AGGCAGATGTTCTTCCCGGCGACTGTTCCGGCATATTACAGAGCTCCTCCTGCGTCCTGC
____________________________________________________________
consensus AGGCAGATGTTCTTCCCGGCGACTGTTCCGGCATATTACAGAGCTCCTCCTGCGTCCTGC
. : . : . : . : . : . :
rJMFF015P01+ TAAATCAAAGCGGCGGCCGGCCGCGGGGATATATGCTTCCATTCAACAAATATATTATTG
JMFS059E04- TAAATCAAAGCGGCGGCCGGCCGCGGGGATATATGCTTCCATTCAACAAATATATTATTG
____________________________________________________________
consensus TAAATCAAAGCGGCGGCCGGCCGCGGGGATATATGCTTCCATTCAACAAATATATTATTG
. : . : . : . : . : . :
rJMFF015P01+ TATCTCTAATTTGTCTCTTTCTCCACTTTTGTTCATTAACTTCAAGTAAATATTGTGCAC
JMFS059E04- TATCTCTAATTTGTCTCTTTCTCCACTTTTGTTCATTAACTTCAAGTAAATATTGTGCAC
____________________________________________________________
consensus TATCTCTAATTTGTCTCTTTCTCCACTTTTGTTCATTAACTTCAAGTAAATATTGTGCAC
. : . : . : . : . : . :
rJMFF015P01+ AACATTTATAGATTCCTGTCTCATGTACTCTCCAGCATCAATCTTTTACAGATTACTATG
JMFS059E04- AACATTTATAGATTCCTGTCTCATGTACTCTCCAGCATCAATCTTTTACAGATTACTATG
____________________________________________________________
consensus AACATTTATAGATTCCTGTCTCATGTACTCTCCAGCATCAATCTTTTACAGATTACTATG
. : . : . : . : . : . :
rJMFF015P01+ GCGATGTAATGTAAACTGTCAATTACTTCCTATGATTAAAATATA
JMFS059E04- GCGATGTAATGTAAACTGTCAATTACTTCCTATGATTAAAATATACTCCGTAGTTTAGAA
____________________________________________________________
consensus GCGATGTAATGTAAACTGTCAATTACTTCCTATGATTAAAATATACTCCGTAGTTTAGAA