| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS006H04 | Sequence | 572 | 003281 (9) | gb:AC105364_1737976 | 8e-39 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | |||||
| JMFS031D03 | Sequence | 560 | 003281 (9) | gb:AC105364_1737976 | 6e-46 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | |||||
| JMFS042C12 | Sequence | 640 | 003281 (9) | gb:AC105364_1737976 | 2e-89 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | |||||
| JMFS049H04 | Sequence | 606 | 003281 (9) | gb:AC105364_1737976 | 7e-15 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | |||||
| JMFS098G05 | Sequence | 638 | 003281 (9) | gb:AC105364_1737976 | 8e-57 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | |||||
| JMFS140C10 | Sequence | 625 | 003281 (9) | gb:AC105364_1737976 | 5e-55 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | |||||
| JMSF014D23 | Sequence | 156 | 003281 (9) | 711 | 012062 (3) | gb:AY080803_1568502 | 2e-05 | Arabidopsis thaliana unknown protein (At2g01690) mRNA, partial cds. | |||
| JMSF018L10 | Sequence | 557 | 003281 (9) | gb:AC105364_1737976 | 2e-22 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | 771 | 012062 (3) | gb:AY080803_1568502 | 5e-17 | Arabidopsis thaliana unknown protein (At2g01690) mRNA, partial cds. |
| JMSF019C14 | Sequence | 384 | 003281 (9) | gb:AC105364_1737976 | 3e-10 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete se | 773 | 012062 (3) | gb:AY080803_1568502 | 2e-17 | Arabidopsis thaliana unknown protein (At2g01690) mRNA, partial cds. |
This contig is upended
. : . : . : . : . : . :
JMFS042C12+ CTTAGCATATTANATAAACCATCAAGGAAATCAGGAAGGAA
____________________________________________________________
consensus CTTAGCATATTANATAAACCATCAAGGAAATCAGGAAGGAA
. : . : . : . : . : . :
JMFS042C12+ ACCAAGCATATCTATATCTGGAACACTGTCTAATACTGTGATCCACCCGACCAAAAATTG
____________________________________________________________
consensus ACCAAGCATATCTATATCTGGAACACTGTCTAATACTGTGATCCACCCGACCAAAAATTG
. : . : . : . : . : . :
JMFS042C12+ CCGCACATAAGGATTGAGGACATTCATCCGTTCTCTCAACAATGGTATAAATTCTTCAAT
____________________________________________________________
consensus CCGCACATAAGGATTGAGGACATTCATCCGTTCTCTCAACAATGGTATAAATTCTTCAAT
. : . : . : . : . : . :
JMFS042C12+ GCTGAATTGATCACTCTCAGTGACAATATCCTTCACAAGTCTATCTAAAAGATGTGCAGC
____________________________________________________________
consensus GCTGAATTGATCACTCTCAGTGACAATATCCTTCACAAGTCTATCTAAAAGATGTGCAGC
. : . : . : . : . : . :
JMFS042C12+ ACTTTGCACACTGGAATCTGAGTCTGCTGAGAGTTTGCACAAAGCATCAAAGATCTCATT
____________________________________________________________
consensus ACTTTGCACACTGGAATCTGAGTCTGCTGAGAGTTTGCACAAAGCATCAAAGATCTCATT
. : . : . : . : . : . :
JMFS042C12+ GAAAAACACAATAAAATCTCCTCTTACGACCTTGGCTATGTTATACAGGGCTTCACAAGC
JMFS031D03+ GC
JMFS098G05+ GCTATATTATACAGAGCTTCACAGGC
JMFS140C10+ ACCTTTGCTATATTATACAGAGCTTCACAGGC
____________________________________________________________
consensus GAAAAACACAATAAAATCTCCTCTTACGACCTTTGCTATATTATACAGAGCTTCACAGGC
. : . : . : . : . : . :
JMFS042C12+ ATAATAGCGAACTCTGCTATCTTGATCAGAAAAGGAATTGAGGACTGGTGGTACTATTTT
JMFS031D03+ ATAATAACGAACTCTACTATCTTGATCCGAAAAGGAGTTCAGTACAGGTGGCACAATTTG
JMFS098G05+ ATAATAACGAACTCTACTATCTTGATCCGAAAAGGAGTTCAGTACAGGTGGCACAATTTG
JMFS140C10+ ATAATAACGAACTCTACTATCTTGATCCGAAAAGGAGTTCAGTACAGGTGGCACAATTTG
JMFS006H04+ AGTTCAGTACAGGTGGCACAATTTG
____________________________________________________________
consensus ATAATAACGAACTCTACTATCTTGATCCGAAAAGGAGTTCAGTACAGGTGGCACAATTTG
. : . : . : . : . : . :
JMFS042C12+ CTCAAGATGCTGTGCTGCTTCAGTAGTCAAACCCACAGTTGCGGCAGCTAAACCTATCAA
JMFS031D03+ CTCAAGATGCTGAGCTGCTTCAGAAGTCAAACCCACAGTTGCAGCAGCTAACCCTATCAA
JMFS098G05+ CTCAAGATGCTGAGCTGCTTCAGAAGTCAAACCCACAGTTGCAGCAGCTAACCCTATCAA
JMFS140C10+ CTCAAGATGCTGAGCTGCTTCAGAAGTCAAACCCACAGTTGCAGCAGCTAACCCTATCAA
JMFS006H04+ CTCAAGATGCTGAGCTGCTTCAGAAGTCAAACCCACAGTTGCAGCAGCTAACCCTATCAA
____________________________________________________________
consensus CTCAAGATGCTGAGCTGCTTCAGAAGTCAAACCCACAGTTGCAGCAGCTAACCCTATCAA
. : . : . : . : . : . :
JMFS042C12+ TCCTCCTTTCCGGTGATTTGCTTGGGGAGAGTAGGTAAACTCATGGGTCAACAAATGGAT
JMFS031D03+ TCCTCCTTTCCGGTGATTGGCTTGGGGAGAGTAGGTATACTCCTCGGTCAACAAATTGAT
JMFS098G05+ TCCTCCTTTCCGGTGATTGGCTTGGGGAGAGTAGGTATACTCCTCGGTCAACAAATTGAT
JMFS140C10+ TCCTCCTTTCCGGTGATTGGCTTGGGGAGAGTAGGTATACTCCTCGGTCAACAAATTGAT
JMFS006H04+ TCCTCCTTTCCGGTGATTGGCTTGGGGAGAGTAGGTATACTCCTCGGTCAACAAATTGAT
JMSF018L10+ TCCGGTGATTGGCTTGGGGAGAGTAGGTATACTCCTCGGTCAACAAATTGAT
JMFS049H04+ AAATTGAT
____________________________________________________________
consensus TCCTCCTTTCCGGTGATTGGCTTGGGGAGAGTAGGTATACTCCTCGGTCAACAAATTGAT
. : . : . : . : . : . :
JMFS042C12+ CACGGCATTAATCTTGTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCAC
JMFS031D03+ CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
JMFS098G05+ CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
JMFS140C10+ CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
JMSF019C14+ CTCCAGCCAACTGNTTCACTATCCCCTCCAA
JMFS006H04+ CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
JMSF018L10+ CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
JMFS049H04+ CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
____________________________________________________________
consensus CACAGCAGTAATCTTGTCGTGATCACCAGCTCCAGCCAACTGTTTCACTATCCCCTCCAA
. : . : . : . : . : . :
JMFS042C12+ CTCGAGAGCCGCATTCTTGCGCTTCTCGTAGAGCTTATCGGAGA
JMFS031D03+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
JMFS098G05+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
JMFS140C10+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
JMSF019C14+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
JMFS006H04+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
JMSF018L10+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
JMFS049H04+ CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCNGAGAACCGC
____________________________________________________________
consensus CTCCAGAGCTGCATTCTTGCGCTTCTCGTAGAGCTTATCAGAGAGGTTCCGGAGAACCGC
. : . : . : . : . : . :
JMFS031D03+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
JMFS098G05+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
JMFS140C10+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
JMSF019C14+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
JMFS006H04+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
JMSF018L10+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
JMFS049H04+ AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
____________________________________________________________
consensus AGCCGGAATCACAGACAAAGCCTCCGAAGTAGCCATACTAGTCAATTTCACACAAAACCC
. : . : . : . : . : . :
JMFS031D03+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
JMFS098G05+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
JMFS140C10+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
JMSF019C14+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTCAAAACACACAATCAAA
JMFS006H04+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
JMSF018L10+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
JMFS049H04+ TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
____________________________________________________________
consensus TAGACACAGAAAAAGAAGAAACTATATACACATACAACACACTC-AAACACACAATCAAA
. : . : . : . : . : . :
JMFS031D03+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
JMFS098G05+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
JMFS140C10+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
JMSF019C14+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
JMSF014D23+ CCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCCGTACGT
JMFS006H04+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
JMSF018L10+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
JMFS049H04+ TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
____________________________________________________________
consensus TTCCCTTTCTAATCTCCTCCTCCAGAAGCTGAACCATCCCTCCCCCAATCACCC-TACGT
. : . : . : . : . : . :
JMFS031D03+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMFS098G05+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMFS140C10+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMSF019C14+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMSF014D23+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMFS006H04+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMSF018L10+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
JMFS049H04+ GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
____________________________________________________________
consensus GTATATATAATATATACACACACATATATATAGGTGGGTATATGTAACTCTGTGGAATAC
. : . : . : . : . : . :
JMFS031D03+ AAGTGAAGAACAGATCTA
JMFS098G05+ AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAG
JMFS140C10+ AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAGAAA
JMSF019C14+ AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAGAAATGGAAATCAAT
JMSF014D23+ AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAGAAATGGAAATCAATCCAC
JMFS006H04+ AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAGAAATGGAAATCAATCCACGATTGAA
JMSF018L10+ AAGTGAAGAACAGATNTAATGGAGAAGAAAGAAAGAAATGGAAATCAATCCACGATTGAA
JMFS049H04+ AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAGAAATGGAAATCAATCCACGATTGAA
____________________________________________________________
consensus AAGTGAAGAACAGATCTAATGGAGAAGAAAGAAAGAAATGGAAATCAATCCACGATTGAA
. : . : . : . : . : . :
JMFS006H04+ TAGATCTTG
JMSF018L10+ TAGATCTTGGGGGTTTCTGTTTTATACAAACCTTTTTTTATTACCCTTTTTGGGGTTTTT
JMFS049H04+ TAGATCTTGGGGGTTTCTGTTTTATACAAACCTTTTTTTATTACCCTTTTTGGGGTTTTT
____________________________________________________________
consensus TAGATCTTGGGGGTTTCTGTTTTATACAAACCTTTTTTTATTACCCTTTTTGGGGTTTTT
. : . : . : . : . : . :
JMSF018L10+ TTTTGTTTAATTTGATGAGAGAGACT
JMFS049H04+ TTTTGTTTAATTTGATGAGAGAGACTGAGAGAGAGAGAAGATAGTATGTAAATTTTAAGC
____________________________________________________________
consensus TTTTGTTTAATTTGATGAGAGAGACTGAGAGAGAGAGAAGATAGTATGTAAATTTTAAGC
. : . : . : . : . : . :
JMFS049H04+ TAAGCGAGTCGATGACTCGCTGACTCAGTAATTTTAACAGTATAATGATGTGAAGCTGTC
____________________________________________________________
consensus TAAGCGAGTCGATGACTCGCTGACTCAGTAATTTTAACAGTATAATGATGTGAAGCTGTC