Previous Contig 003239:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E10Sequence592003239 (6)gb:AP003990_18360121e-52Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ10752010248 (5)gb:AP003990_18360129e-51Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ10
JMFF025P14Sequence576003239 (6)gb:AP003990_18360121e-52Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ10803010248 (5)gb:AP003990_18360126e-41Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ10
JMFF037N07Sequence159003239 (6)779010248 (5)gb:AP003990_18360125e-36Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ10
JMFF042L16Sequence632003239 (6)gb:AP003990_18360126e-62Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ10559010248 (5)gb:AB023482_15155966e-06Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03
JMFS045C08Sequence607003239 (6)
JMSF012E23Sequence216003239 (6)721010248 (5)gb:AY086096_15711544e-30Arabidopsis thaliana clone 21250 mRNA, complete sequence.

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF042L16+ ATGGTGATGAAGATACGCGATCCCCTCTGCAGAACCAATCGCAAT
                      ____________________________________________________________
consensus ATGGTGATGAAGATACGCGATCCCCTCTGCAGAACCAATCGCAAT
 
. : . : . : . : . : . :
JMFF042L16+ GCTCATTCTCCGCTTCCAATCAAGAAGGCTTTCAGTTGAATGCTGCCCGTGAAGATGAGA
JMFF025P14+ TCCAATCAAGAAGGCTTTCAGTTGAATGCTGCCCGTGAAGATGAGA
JMFF007E10+ TCCAATCAAGAAGGCTTTCAGTTGAATGCTGCCCGTGAAGATGAGA
                      ____________________________________________________________
consensus GCTCATTCTCCGCTTCCAATCAAGAAGGCTTTCAGTTGAATGCTGCCCGTGAAGATGAGA
 
. : . : . : . : . : . :
JMFF042L16+ TAGTAAGCTTAGATTGGGCATATAATCATATACAATTAGACGCTCTTGTCCTTCAGCACA
JMFF025P14+ TAGTAAGCTTAGATTGGGCATATAATCATATACAATTAGACGCTCTTGTCCTTCAGCACA
JMFF007E10+ TAGTAAGCTTAGATTGGGCATATAATCATATACAATTAGACGCTCTTGTCCTTCAGCACA
                      ____________________________________________________________
consensus TAGTAAGCTTAGATTGGGCATATAATCATATACAATTAGACGCTCTTGTCCTTCAGCACA
 
. : . : . : . : . : . :
JMFF042L16+ ATAGCCCCGTAAATTCAGCAGATTCTTGTGCCTTACTCGGGCCAGTATTTCAACCTCAAC
JMFF025P14+ ATAGCCCCGTAAATTCAGCAGATTCTTGTGCCTTACTCGGGCCAGTATTTCAACCTCAAC
JMFF007E10+ ATAGCCCCGTAAATTCAGCAGATTCTTGTGCCTTACTCGGGCCAGTATTTCAACCTCAAC
                      ____________________________________________________________
consensus ATAGCCCCGTAAATTCAGCAGATTCTTGTGCCTTACTCGGGCCAGTATTTCAACCTCAAC
 
. : . : . : . : . : . :
JMFF042L16+ AGCAAATTCCATCTCTGCTTTGTTGCTCCACACCTTTAGCCTTTTCACCGCAATTTGTGA
JMFF025P14+ AGCAAATTCCATCTCTGCTTTGTTGCTCCACACCTTTAGCCTTTTCACCGCAATTTGTGA
JMFF007E10+ AGCAAATTCCATCTCTGCTTTGTTGCTCCACACCTTTAGCCTTTTCACCGCAATTTGTGA
                      ____________________________________________________________
consensus AGCAAATTCCATCTCTGCTTTGTTGCTCCACACCTTTAGCCTTTTCACCGCAATTTGTGA
 
. : . : . : . : . : . :
JMFF042L16+ ACCATCCCAGAGCTGACCCCAATAAACGCTACCGAATCCGCCTTCTCCAAGCTTGTTGTC
JMFF025P14+ ACCATCCCAGAGCTGACCCCAATAAACGCTACCGAATCCGCCTTCTCCAAGCTTGTTGTC
JMFF007E10+ ACCATCCCAGAGCTGACCCCAATAAACGCTACCGAATCCGCCTTCTCCAAGCTTGTTGTC
                      ____________________________________________________________
consensus ACCATCCCAGAGCTGACCCCAATAAACGCTACCGAATCCGCCTTCTCCAAGCTTGTTGTC
 
. : . : . : . : . : . :
JMFF042L16+ ATAGTTAAAATTGTTCGTAGCAGACTGCAATTCCTTCAGGGAAAACACCCTCCACGTTGC
JMFF025P14+ ATAGTTAAAATTGTTCGTAGCAGACTGCAATTCCTTCAGGGAAAACACCCTCCACGTTGC
JMFF007E10+ ATAGTTAAAATTGTTCGTAGCAGACTGCAATTCCTTCAGGGAAAACACCCTCCACGTTGC
JMFS045C08+ ACGTTGC
                      ____________________________________________________________
consensus ATAGTTAAAATTGTTCGTAGCAGACTGCAATTCCTTCAGGGAAAACACCCTCCACGTTGC
 
. : . : . : . : . : . :
JMFF042L16+ CCGTTTCTTCGATTCATCCTTCCCAGAACCCTTTAGGCAGCAAAATAGTGGGGAAAAGAC
JMFF025P14+ CCGTTTCTTCGATTCATCCTTCCCAGAACCCTTTAGGCAGCAAAATAGTGGGGAAAAGAC
JMFF007E10+ CCGTTTCTTCGATTCATCCTTCCCAGAACCCTTTAGGCAGCAAAATAGTGGGGAAAAGAC
JMFS045C08+ CCGTTTCTTTGATTCATCCTTCCCAGAACCCTTTAGGCAGCAAAATAGTGGGGAAAAGAC
                      ____________________________________________________________
consensus CCGTTTCTTCGATTCATCCTTCCCAGAACCCTTTAGGCAGCAAAATAGTGGGGAAAAGAC
 
. : . : . : . : . : . :
JMFF042L16+ CATGTTCTTCATCACAACAAAAACACCCAAATTTCCTGTCCCTACACAGATATATGGAAC
JMFF025P14+ CATGTTCTTCATCACAACAAAAACACCCAAATTTCCTGTCCCTACACAGATATATGGAAC
JMFF007E10+ CATGTTCTTCATCACAACAAAAACACCCAAATTTCCTGTCCCTACACAGATATATGGAAC
JMFS045C08+ CATGTTCTTCATCACAACAAAAACACCCAAATTTCCTGTCCCTACACAGATATATGGAAC
                      ____________________________________________________________
consensus CATGTTCTTCATCACAACAAAAACACCCAAATTTCCTGTCCCTACACAGATATATGGAAC
 
. : . : . : . : . : . :
JMFF042L16+ -AAAGATTGATTTTTGATTTTCTGTCACAAAAGAAAATAGCGTTGATTAGAGCACATCTT
JMFF025P14+ AAAAGATTGATTTTTGATTTTCTGTCACAAAAGAAAATAGCGTTGATTAGAGCACATCTT
JMFF007E10+ AAAAGATTGATTTTTGATTTTCTGTCACAAAAGAAAATAGCGTTGATTAGAGCACATCTT
JMFS045C08+ AAAAGATTGATTTTTGATTTTCTGTCACAAAAGAAAATAGCGTTGATTAGAGCACATCTT
                      ____________________________________________________________
consensus AAAAGATTGATTTTTGATTTTCTGTCACAAAAGAAAATAGCGTTGATTAGAGCACATCTT
 
. : . : . : . : . : . :
JMFF042L16+ CCACCAACAGGCTAAACAGCATCAAGAACCAGTCCATGAGCGCTC
JMFF025P14+ CCACCAACAGGCTAAACAGCATCAAGAACCAGTCCATGAGCGCTC
JMFF007E10+ CCACCAACAGGCTAAACAGCATCAAGAACCAGTCCATGAGCGCTCCCCTTCTGTAAAGGT
JMFS045C08+ CCACCAACAGGCTAAACAGCATCAAGAACCAGTCCATGAGCGCTCCCCTTCTGTAAAGGT
                      ____________________________________________________________
consensus CCACCAACAGGCTAAACAGCATCAAGAACCAGTCCATGAGCGCTCCCCTTCTGTAAAGGT
 
. : . : . : . : . : . :
JMFF007E10+ TT
JMFS045C08+ TTGAACTTTCTCTCTCTAACAACTGTCAAAGTAGACCGGTCAGAGAAAATGAAACTGCCA
                      ____________________________________________________________
consensus TTGAACTTTCTCTCTCTAACAACTGTCAAAGTAGACCGGTCAGAGAAAATGAAACTGCCA
 
. : . : . : . : . : . :
JMFF037N07+ AAAAAAAAAAAAGTTTTCTTTTTTTTTGTGTAACAGCCAAACAGAA
JMSF012E23+ AAAAAAAAAAAAGTTTTCTTTTTTTTTGTGTAACAGCCAAACAGAA
JMFS045C08+ GCCCAGTTTTTTCAAAAAAAAAAAAAGTTTTCTTTTTTTTTGTGTAACAGCCAAACAGAA
                      ____________________________________________________________
consensus GCCCAGTTTTTTCAAAAAAAAAAAAAGTTTTCTTTTTTTTTGTGTAACAGCCAAACAGAA
 
. : . : . : . : . : . :
JMFF037N07+ CCTTCCGATCGAAGAAATTTTGGGTAGAGGAGAAGAGAAAGGTTGAGTAAAGGGAGTGAG
JMSF012E23+ CCTTCCGATCGAAGAAATTTTGGGTAGAGGAGAAGAGAAAGGTTGAGTAAAGGGAGTGAG
JMFS045C08+ CCTTCCGATCGAAGAAATTTTGGGTAGAGGAGAAGAGAAAGGTTGAGTAAAGGGAGTGAG
                      ____________________________________________________________
consensus CCTTCCGATCGAAGAAATTTTGGGTAGAGGAGAAGAGAAAGGTTGAGTAAAGGGAGTGAG
 
. : . : . : . : . : . :
JMFF037N07+ AGGGATAGGAGCCAACAAGGTTAGGAGCAAGCTGGTGAGAAAAGAG
JMSF012E23+ AGGGATAGGAGCCAACAAGGTTAGGAGCAAGCTGGTGAGAAAAGAGATTCCAAATACACA
JMFS045C08+ AGGGATAGGAGCCAACAAGGTTAGGAGCAAGCTGGTGAGAAAAGAGATTCCAAATACACA
                      ____________________________________________________________
consensus AGGGATAGGAGCCAACAAGGTTAGGAGCAAGCTGGTGAGAAAAGAGATTCCAAATACACA
 
. : . : . : . : . : . :
JMSF012E23+ AAAACACTATTGCTCTACACTGCTTTTTTGTTCCTGT
JMFS045C08+ AAAACACTATTGCTCTACACTGCTTTTTTGTTCCTGTGTTTTGGTTGAATCCATGTAGCC
                      ____________________________________________________________
consensus AAAACACTATTGCTCTACACTGCTTTTTTGTTCCTGTGTTTTGGTTGAATCCATGTAGCC
 
. : . : . : . : . : . :
JMFS045C08+ TGAATATTTAATTACTTTTCAAGTTTGAAATTGATAGGAGAGAGAAAGAGAGAGATTGTG
                      ____________________________________________________________
consensus TGAATATTTAATTACTTTTCAAGTTTGAAATTGATAGGAGAGAGAAAGAGAGAGATTGTG