Previous Contig 003126:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS032G06Sequence620003126 (3)
JMFS061E07Sequence592003126 (3)
JMFS073A11Sequence624003126 (3)gb:AY046028_15615203e-04Arabidopsis thaliana putative trehalose-6-phosphate synthase (At1g68020) mRNA, c

Alignment

This contig is upended


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JMFS073A11+                                         GGCTACAGTGGCAACCCGGGAGAGTTTCTT
                      ____________________________________________________________
consensus                                           GGCTACAGTGGCAACCCGGGAGAGTTTCTT
 
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JMFS073A11+           CNCCGCCCGCCCAAAAGTTAGGGATTCACCAGAAGCAAGGTCCAATAAGTTCGAGTATGA
                      ____________________________________________________________
consensus             CNCCGCCCGCCCAAAAGTTAGGGATTCACCAGAAGCAAGGTCCAATAAGTTCGAGTATGA
 
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JMFS073A11+           CCTCGAAACCATTGTCGATTCACCACAATATATACACCTCTCGAAAATCAACAAAACCAG
                      ____________________________________________________________
consensus             CCTCGAAACCATTGTCGATTCACCACAATATATACACCTCTCGAAAATCAACAAAACCAG
 
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JMFS073A11+           CAAGTGATAGAAATCAAACTCTGGGGAAAAATGGGAAACATCAACTGTTAAAAGAGAGCA
                      ____________________________________________________________
consensus             CAAGTGATAGAAATCAAACTCTGGGGAAAAATGGGAAACATCAACTGTTAAAAGAGAGCA
 
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JMFS073A11+           GAATATAATAACACAAACTACTAAGAGTGAATACAAAAGTAGGAATTATTGGTCCCATTC
                      ____________________________________________________________
consensus             GAATATAATAACACAAACTACTAAGAGTGAATACAAAAGTAGGAATTATTGGTCCCATTC
 
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JMFS073A11+           AAGAAACACAATCATAACACAAACTACTAAGTGTGAATCCAGGACCCCTCACATAATTAT
                      ____________________________________________________________
consensus             AAGAAACACAATCATAACACAAACTACTAAGTGTGAATCCAGGACCCCTCACATAATTAT
 
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JMFS073A11+           TGCTTCTCACAATAATATAACAGAAATGATATGAATTCAAATTAACCACAGAATCTCCAT
JMFS032G06+                                                   ATTAACCACAGAATCTCCAT
                      ____________________________________________________________
consensus             TGCTTCTCACAATAATATAACAGAAATGATATGAATTCAAATTAACCACAGAATCTCCAT
 
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JMFS073A11+           GAAAACACAAATAATCATCAAGAACTAACAGAAATGATATGAATTCAAATTAACCACAGA
JMFS061E07+                   AAATAATCATCAAGAACTAACAGAAATGATATGAATTCAAATTAACCACAGA
JMFS032G06+           GAAAACACAAATAATCATCAAGAACTAACAGAAATGATATGAATTCAAATTAACCACAGA
                      ____________________________________________________________
consensus             GAAAACACAAATAATCATCAAGAACTAACAGAAATGATATGAATTCAAATTAACCACAGA
 
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JMFS073A11+           ATCTCCATGAAAACACAAATAATCATCAAAGCAATCCAGAAATTACAGAAGCCAGAAGAC
JMFS061E07+           ATCTCCATGAAAACACAAATAATCATCAAAGCAATCCAGAAATTACAGAAGCCAGAAGAC
JMFS032G06+           ATCTCCATGAAAACACAAATAATCATCAAAGCAATCCAGAAATTACAGAAGCCAGAAGAC
                      ____________________________________________________________
consensus             ATCTCCATGAAAACACAAATAATCATCAAAGCAATCCAGAAATTACAGAAGCCAGAAGAC
 
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JMFS073A11+           AAAATCCCTCTAAATATGTGATCAAACTTGAATTTAAAAGGAAAAGGATTTGAAGGAACC
JMFS061E07+           AAAATCTCTCTAAATATGTGATCAAACTTGAATTTAAAAGGAAAAGGATTTGAAGGAACC
JMFS032G06+           AAAATCCCTCTAAATATGTGATCAAACTTGAATTTAAAAGGAAAAGGATTTGAAGGAACC
                      ____________________________________________________________
consensus             AAAATCCCTCTAAATATGTGATCAAACTTGAATTTAAAAGGAAAAGGATTTGAAGGAACC
 
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JMFS073A11+           TGCAAAGAGGGATAAACACAACCTAACCCAAAGCTAAATCTAATCAGAGATTCA      
JMFS061E07+           TGCAAAGAGGGATAAACACAACCTAACCCAAAGCTAAATCTAATCAGAGATTCAGAGAAA
JMFS032G06+           TGCAAAGAGGGATAAACACAACCTAACCCAAAGCTAAATCTAATCAGAGATTCAGAGAAA
                      ____________________________________________________________
consensus             TGCAAAGAGGGATAAACACAACCTAACCCAAAGCTAAATCTAATCAGAGATTCAGAGAAA
 
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JMFS061E07+           ACAAGTGAGCATAAGAAAAATCACCTGAATAAATGACAAAATCAAGAAAACCCAAGCAGT
JMFS032G06+           ACAAGTGAGCATAAGAAAAATCACCTGAATAAATGACAAAATCAAGAAAACCCAAGCAGT
                      ____________________________________________________________
consensus             ACAAGTGAGCATAAGAAAAATCACCTGAATAAATGACAAAATCAAGAAAACCCAAGCAGT
 
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JMFS061E07+           AGATAATCCATCATTAAAGATGAGAAAAAGCAATAACCACTGAAATCGAAAGCTACCCAA
JMFS032G06+           AGATAATCCATCATTAAAGATGAGAAAAAGCAATAACCACTGAAATCGAAAGCTACCCAA
                      ____________________________________________________________
consensus             AGATAATCCATCATTAAAGATGAGAAAAAGCAATAACCACTGAAATCGAAAGCTACCCAA
 
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JMFS061E07+           TCTTCCATCAAGAGCAGTAATGTCCAAGAGAGTGCGAGAGAATCCACTAGGCTAGTTACT
JMFS032G06+           TCTTCCATCAAGAGCAGTAATGTCCAAGAGAGTGCGAGAGAATCCACTAGGCTAGTTACT
                      ____________________________________________________________
consensus             TCTTCCATCAAGAGCAGTAATGTCCAAGAGAGTGCGAGAGAATCCACTAGGCTAGTTACT
 
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JMFS061E07+           AGTAAAAGCAACACTACAACTAATTCAAACAAATATTCTGAGGTTTCAACAAAGTGAATA
JMFS032G06+           AGTAAAAGCAACACTACAACTAATTCAAACAAATATTCTGAGGTTTCAACAAAGTGAATA
                      ____________________________________________________________
consensus             AGTAAAAGCAACACTACAACTAATTCAAACAAATATTCTGAGGTTTCAACAAAGTGAATA
 
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JMFS061E07+           AATTACTATACTGTTTGCCAGTGCTCGCACGTAGCAAAAACAAAGAACCCAAAATAATAT
JMFS032G06+           AATTACTATACTGTTTGCCAGTGCTCGCACGTAGCAAAAACAAAGAACCCAAAATAATAT
                      ____________________________________________________________
consensus             AATTACTATACTGTTTGCCAGTGCTCGCACGTAGCAAAAACAAAGAACCCAAAATAATAT
 
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JMFS061E07+           AAATAAATAAAAATGACCAATCAGTAAGCAAACTACAGTAAATAAGAACCTTT       
JMFS032G06+           AAATAAATAAAAATGACCAATCAGTAAGCAAACTACAGTAAATAAGAACCTTTGATAGTT
                      ____________________________________________________________
consensus             AAATAAATAAAAATGACCAATCAGTAAGCAAACTACAGTAAATAAGAACCTTTGATAGTT