Previous Contig 003058:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030L11Sequence608006144 (6)gb:AP002842_18230767e-70Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN757003058 (7)pir|T52121|T521215e-81acyl-CoA oxidase (EC 1.3.3.6), peroxisomal [validated] - Arabidopsis thaliana>gb
JMFF033I14Sequence477006144 (6)gb:AP002842_18230766e-44Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN810003058 (7)pir|T52121|T521211e-88acyl-CoA oxidase (EC 1.3.3.6), peroxisomal [validated] - Arabidopsis thaliana>gb
JMFS025F08Sequence603003058 (7)gb:AF404404_17967281e-53Glycine max acyl-CoA oxidase (ACX1;2) mRNA, complete cds.
JMFS169G10Sequence563003058 (7)gb:AF404404_17967284e-53Glycine max acyl-CoA oxidase (ACX1;2) mRNA, complete cds.
JMSF014D17Sequence481006144 (6)gb:AP002842_18230764e-35Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN759003058 (7)pir|T52121|T521211e-89acyl-CoA oxidase (EC 1.3.3.6), peroxisomal [validated] - Arabidopsis thaliana>gb
JMSF023G21Sequence695006144 (6)gb:AP002842_18230763e-75Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN765003058 (7)gb:AF404404_17967285e-68Glycine max acyl-CoA oxidase (ACX1;2) mRNA, complete cds.
JMSF034N01Sequence678006144 (6)gb:AP002842_18230761e-82Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJN707003058 (7)gb:AF404404_17967281e-77Glycine max acyl-CoA oxidase (ACX1;2) mRNA, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014D17+ ACTACAGCTTATATGGGAAG
rJMFF033I14+ GAACTACAGCTTATATGGGAAG
                      ____________________________________________________________
consensus GAACTACAGCTTATATGGGAAG
 
. : . : . : . : . : . :
rJMSF014D17+ ACTGCAACAACTGCTGCAATGTCGTTCTAATGTTCAGCAAGCAAAGGATTGGATGAACCC
rJMFF033I14+ ACTGCAACAACTGCTGCAATGTCGTTCTAATGTTCAGCAAGCAAAGGATTGGATGAACCN
                      ____________________________________________________________
consensus ACTGCAACAACTGCTGCAATGTCGTTCTAATGTTCAGCAAGCAAAGGATTGGATGAACCC
 
. : . : . : . : . : . :
rJMSF014D17+ TAGTGCAGTATTGGAGGCTTACGAAGCAAGAGCTGCGAGAATGATCGCTTCTTGTGCTAA
rJMSF034N01+ TAGTGCAGTATTGGAGGCTTACGAAGCAAGAGCTGCGAGAATGATCGCTTCTTGTGCTAA
rJMFF033I14+ TAGTGCAGTATTGGAGGCTTACGAAGCAAGAGCTGCGAGAATGATCGCTTCTTGTGCTAA
                      ____________________________________________________________
consensus TAGTGCAGTATTGGAGGCTTACGAAGCAAGAGCTGCGAGAATGATCGCTTCTTGTGCTAA
 
. : . : . : . : . : . :
rJMSF014D17+ AAACCTAAACAACTTTGCTAGCTCTGAAGACGGCTTTGCAGAATTATCTTCGGATTTAGT
rJMSF034N01+ AAACCTAAACAACTTTGCTAGCTCTGAAGACGGCTTTGCAGAATTATCTTCGGATTTAGT
rJMSF023G21+ GGCTTTGCAGAATTATCTTCGGATTTAGT
rJMFF030L11+ GGCTTTGCAGAATTATCTTCGGATTTAGT
rJMFF033I14+ AAACCTAAACAACTTTGCTAGCTCTGAAGACGGCTTTGCAGAATTATCTTCGGATTTAGT
                      ____________________________________________________________
consensus AAACCTAAACAACTTTGCTAGCTCTGAAGACGGCTTTGCAGAATTATCTTCGGATTTAGT
 
. : . : . : . : . : . :
rJMSF014D17+ TGAAGCAGCAGTCGCTCATTGCCAAGTGATCGTCGTTTCCAAGTTTATCGAAAAGCTGAA
rJMSF034N01+ TGAAGCAGCAGTCGCTCATTGCCAAGTGATCGTCGTTTCCAAGTTTATCGAAAAGCTGAA
rJMSF023G21+ TGAAGCAGCAGTCGCTCATTGCCAAGTGATCGTCGTTTCCAAGTTTATCGAAAAGCTGAA
rJMFF030L11+ TGAAGCAGCAGTCGCTCATTGCCAAGTGATCGTCGTTTCCAAGTTTATCGAAAAGCTGAA
rJMFF033I14+ TGAAGCAGCAGTCGCTCATTGCCAAGTGATCGTCGTTTCCAAGTTTATCGAAAAGCTGAA
JMFS025F08+ GAA
                      ____________________________________________________________
consensus TGAAGCAGCAGTCGCTCATTGCCAAGTGATCGTCGTTTCCAAGTTTATCGAAAAGCTGAA
 
. : . : . : . : . : . :
rJMSF014D17+ GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
rJMSF034N01+ GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
rJMSF023G21+ GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
rJMFF030L11+ GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
rJMFF033I14+ GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
JMFS169G10- AGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
JMFS025F08+ GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
                      ____________________________________________________________
consensus GCAGGATATTCCGGGGAATGGCGTGAAGCAGCAGTTGGAGAATCTTTTCGGGATCTACTC
 
. : . : . : . : . : . :
rJMSF014D17+ GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
rJMSF034N01+ GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
rJMSF023G21+ GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
rJMFF030L11+ GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
rJMFF033I14+ GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
JMFS169G10- GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
JMFS025F08+ GCTNTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
                      ____________________________________________________________
consensus GCTCTACCTCATCCACAAACACCAAGGAGACTTCCTCTCCACCGGCTGCATCACCCCGAA
 
. : . : . : . : . : . :
rJMSF014D17+ GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
rJMSF034N01+ GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
rJMSF023G21+ GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
rJMFF030L11+ GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
rJMFF033I14+ GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
JMFS169G10- GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
JMFS025F08+ GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
                      ____________________________________________________________
consensus GCAGGCCTCGCTCGCAAACGACCAGCTGAGGGCCCTGTACACTTTGGTACGTCCCAACGC
 
. : . : . : . : . : . :
rJMSF014D17+ TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
rJMSF034N01+ TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
rJMSF023G21+ TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
rJMFF030L11+ TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
rJMFF033I14+ TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
JMFS169G10- TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
JMFS025F08+ TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
                      ____________________________________________________________
consensus TGTGGCACTCGTGGATGCTTTTAACTACACCGATCACTTCCTCGATTCAATCCTGGGACG
 
. : . : . : . : . : . :
rJMSF014D17+ CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
rJMSF034N01+ CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
rJMSF023G21+ CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
rJMFF030L11+ CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
rJMFF033I14+ CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
JMFS169G10- CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
JMFS025F08+ CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
                      ____________________________________________________________
consensus CTATGACGGAAACGTGTACCCAAAACTGTACGAGGCGGCGTGGAAGGATCCTCTGAACGA
 
. : . : . : . : . : . :
rJMSF014D17+ ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
rJMSF034N01+ ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
rJMSF023G21+ ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
rJMFF030L11+ ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
rJMFF033I14+ ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
JMFS169G10- ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
JMFS025F08+ ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
                      ____________________________________________________________
consensus ATCCGTCGTGCCTGATGGCTACCATGAATACATCAGGCCATTGCTGAAGCAACAACTGAG
 
. : . : . : . : . : . :
rJMSF014D17+ AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
rJMSF034N01+ AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
rJMSF023G21+ AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
rJMFF030L11+ AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
rJMFF033I14+ AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
JMFS169G10- AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
JMFS025F08+ AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
                      ____________________________________________________________
consensus AATGGCTAGACTTTGAATAAAGAATTGTTTGCTTTAGTTTTTCAATGGATTGGGTCTGAT
 
. : . : . : . : . : . :
rJMSF014D17+ GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
rJMSF034N01+ GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
rJMSF023G21+ GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
rJMFF030L11+ GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
rJMFF033I14+ GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
JMFS169G10- GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
JMFS025F08+ GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
                      ____________________________________________________________
consensus GGCTATGGGCTGTTTGCCTGTTTGTTAAATTAGGTGATTTTTCCCTCATGAAGGGGAATG
 
. : . : . : . : . : . :
rJMSF014D17+ GTGGTTGAAAGCAATTATT
rJMSF034N01+ GTGGTTGAAAGCAATTATTTTTAC
rJMSF023G21+ GTGGTTGAAAGCAATTATTTTTACAACTGGAATCCTACAAATGTTCATGAAACTAATGCA
rJMFF030L11+ GTGGTTGAAAGCAATTATTTTTACAACTGGAATCCTACAAATGTTCATGAAACTAATGCA
rJMFF033I14+ GTGGTTGAAAGCAATTATTTTTACAACTGGAATCCTACAAATGTTCATGAAACTAATGCA
JMFS169G10- GTGGTTGAAAGCAATTATTTTTACAACTGGAATCCTACAAATGTTCATGAAACTAATGCA
JMFS025F08+ GTGGTTGAAAGCAATTATTTTTACAACTGGAATCCTACAAATGTTCATGAAACTAATGCA
                      ____________________________________________________________
consensus GTGGTTGAAAGCAATTATTTTTACAACTGGAATCCTACAAATGTTCATGAAACTAATGCA
 
. : . : . : . : . : . :
rJMSF023G21+ TAATAAT
rJMFF030L11+ TAATAA
rJMFF033I14+ TAATAAT
JMFS169G10- TAATAATACTTATATACAATTATAC
JMFS025F08+ TAATAATACTTATATACAATTATACAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus TAATAATACTTATATACAATTATACAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC