| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024F14 | Sequence | 463 | 002922 (9) | gb:AC005724_1532953 | 5e-33 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | 531 | 009455 (7) | pir|T03793|T03793 | 1e-12 | calmodulin-binding protein TCB60 - common tobacco>gb:NTU58971_1691845 Nicotiana |
| JMFF026J03 | Sequence | 575 | 002922 (9) | gb:AC005724_1532953 | 2e-67 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | 724 | 009455 (7) | pir|T03793|T03793 | 3e-39 | calmodulin-binding protein TCB60 - common tobacco>gb:NTU58971_1691845 Nicotiana |
| JMFF032B02 | Sequence | 524 | 002922 (9) | gb:AC005724_1532953 | 9e-59 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | 719 | 009455 (7) | pir|T03793|T03793 | 6e-39 | calmodulin-binding protein TCB60 - common tobacco>gb:NTU58971_1691845 Nicotiana |
| JMFS011D10 | Sequence | 622 | 002922 (9) | gb:AC005724_1532953 | 1e-59 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | |||||
| JMFS079G08 | Sequence | 627 | 002922 (9) | gb:AC005724_1532953 | 1e-77 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | |||||
| JMFS112D02 | Sequence | 627 | 002922 (9) | gb:AC005724_1532953 | 1e-60 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | |||||
| JMFS138E07 | Sequence | 620 | 002922 (9) | gb:AC005724_1532953 | 4e-61 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | |||||
| JMSF022H18 | Sequence | 652 | 002922 (9) | gb:AC005724_1532953 | 6e-82 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | 744 | 009455 (7) | pir|T03793|T03793 | 2e-42 | calmodulin-binding protein TCB60 - common tobacco>gb:NTU58971_1691845 Nicotiana |
| JMSF041I17 | Sequence | 825 | 002922 (9) | gb:AC005724_1532953 | 7e-93 | Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence. | 632 | 009455 (7) | pir|T03793|T03793 | 3e-28 | calmodulin-binding protein TCB60 - common tobacco>gb:NTU58971_1691845 Nicotiana |
This contig is upended
. : . : . : . : . : . :
JMSF041I17+ CCAACTAGAATTATCTGTAAATATCAG
____________________________________________________________
consensus CCAACTAGAATTATCTGTAAATATCAG
. : . : . : . : . : . :
JMSF041I17+ CTCTCCAAGAGTTCCAACACCTTCTTTTAGTGTTACTTGCAAATCACCAGTCAACAATGG
JMFS079G08+ ATCACCAGTCAACAATGG
JMSF022H18+ TTAGTGTTACTTGCAAATCACCAGTCAACAATGG
____________________________________________________________
consensus CTCTCCAAGAGTTCCAACACCTTCTTTTAGTGTTACTTGCAAATCACCAGTCAACAATGG
. : . : . : . : . : . :
JMSF041I17+ TCTCTTGCCTTCTCGTTCTTTTACAACATGACTTTCAAATTCTTCCTGGGTCCAATCATC
JMFS079G08+ TCTCTGCCTTTCTCGTTCTTNTACAACATGACTTTCAAATTCTTCCTGGGTCCAATCATC
JMSF022H18+ TCTCTTGCCTTCTCGTTCTTTTACAACATGACTTTCAAATTCTTCCTGGGTCCAATCATC
JMFF026J03+ CAATCATC
____________________________________________________________
consensus TCTCTTGCCTTCTCGTTCTTTTACAACATGACTTTCAAATTCTTCCTGGGTCCAATCATC
. : . : . : . : . : . :
JMSF041I17+ ATCATCTTCATTATTAAAATCACCTTCTAGCACAACAACATCCAGCTTCATACATGACTC
JMFS079G08+ ATCATCTTCATTATTAAAATCACCTTCTAGCACAACAACATCCAGCTTCATACATGACTC
JMSF022H18+ ATCATCTTCATTATTAAAATCACCTTCTAGCACAACAACATCCAGCTTCATACATGACTC
JMFF032B02+ AGCTTCATACATGACTC
JMFF026J03+ ATCATCTTCATTATTAAAATCACCTTCTAGCACAACAACATCCAGCTTCATACATGACTC
JMFS138E07+ AGCACAACAACATCCAGCTTCATACATGACTC
JMFS112D02+ CAACAACATCCAGCTTCATACATGACTC
JMFS011D10+ CATCCAGCTTCATACATGACTC
____________________________________________________________
consensus ATCATCTTCATTATTAAAATCACCTTCTAGCACAACAACATCCAGCTTCATACATGACTC
. : . : . : . : . : . :
JMSF041I17+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMFS079G08+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMSF022H18+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMFF032B02+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMFF026J03+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMFS138E07+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMFS112D02+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
JMFS011D10+ AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
____________________________________________________________
consensus AGGTCCAGTTGTTACAACATGTCCACTATTAGAATCAATTAGGACAACATGGATGGCAGC
. : . : . : . : . : . :
JMSF041I17+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMFS079G08+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMSF022H18+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMFF032B02+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMFF026J03+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMFS138E07+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMFS112D02+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
JMFS011D10+ ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
____________________________________________________________
consensus ACCCTGTTCCCCTTCAACTTTACCCCCAGTAAAGAGGGGCAAGGAAAGTCTGGATCTAAA
. : . : . : . : . : . :
JMSF041I17+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMFS079G08+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMSF022H18+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMFF032B02+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMFF024F14+ ATTCGCTTAGGCGATGACCTTGCAGC
JMFF026J03+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMFS138E07+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMFS112D02+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
JMFS011D10+ ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
____________________________________________________________
consensus ATGAAGTTGCATGTTCCGTCCATCAGGCCCTTCAATTCGCTTAGGCGATGACCTTGCAGC
. : . : . : . : . : . :
JMSF041I17+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFS079G08+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMSF022H18+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFF032B02+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFF024F14+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFF026J03+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFS138E07+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFS112D02+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
JMFS011D10+ AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
____________________________________________________________
consensus AATTCTTGCAGGGCCTAACTTTGCCAAAGCTCGTTCCACTTCTTCACTAACAACTCTGCG
. : . : . : . : . : . :
JMSF041I17+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFS079G08+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMSF022H18+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFF032B02+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFF024F14+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFF026J03+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFS138E07+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFS112D02+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
JMFS011D10+ AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
____________________________________________________________
consensus AAGAATTGGTTCCAAGGAAGAGCACAGCTTTTGGAGACTATCCACCTTGAGAGCTTCCAC
. : . : . : . : . : . :
JMSF041I17+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFS079G08+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMSF022H18+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFF032B02+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFF024F14+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFF026J03+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFS138E07+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFS112D02+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
JMFS011D10+ AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
____________________________________________________________
consensus AATAACACTAGCTAAAGCAGGTCGTTTGCGCTCCGGCTGCTGCTCCTCATCTCCTTCCAA
. : . : . : . : . : . :
JMSF041I17+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFS079G08+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMSF022H18+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFF032B02+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFF024F14+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFF026J03+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFS138E07+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFS112D02+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
JMFS011D10+ ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
____________________________________________________________
consensus ACTCCTCTTTCCTCTCATTGAGTTGGTCCTTTCCATGTACCGAGTCTGCATTCTAATCCA
. : . : . : . : . : . :
JMSF041I17+ CCAAACAGAAGCCCTATCCACT
JMFS079G08+ CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
JMSF022H18+ CCAAACAGAAGCC-------CTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
JMFF032B02+ CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
JMFF024F14+ CCAAACAGAAGCCCTATCCACT
JMFF026J03+ CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
JMFS138E07+ CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
JMFS112D02+ CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
JMFS011D10+ CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
____________________________________________________________
consensus CCAAACAGAAGCCCTATCCACTGATTGGTTGTTGACGTTTCCGTTGAGGTCTCCGAGGTT
. : . : . : . : . : . :
JMFS079G08+ TCCCTCTGT
JMSF022H18+ TCCCTCTGTGTCTCTCTCTCTCTC
JMFF032B02+ TCCCTCTGTGTCTCTCTCTCTCTC
JMFF026J03+ TCCCTCTGTGTCTCTCTCTCTCTCAAC
JMFS138E07+ TCCCTCTGTGTCTCTCTCTCTCTCAACAGCTCAGAGTAACGCTTCAGTGCTCTTATTGGG
JMFS112D02+ TCCCTCTGTGTCTCTCTCTCTCTCAACAGCTCAGAGTAACGCTTCAGTGCTCTTATTGGG
JMFS011D10+ TCCCTCTGTGTCTCTCTCTCTCTCAACAGCTCAGAGTAACGCTTCAGTGCTCTTATTGGG
____________________________________________________________
consensus TCCCTCTGTGTCTCTCTCTCTCTCAACAGCTCAGAGTAACGCTTCAGTGCTCTTATTGGG
. : . : . : . : . : . :
JMFS138E07+ CGGCCCAGAGGGGTGGTGAACGCGCGTGGGGGTGGCGCGTGGGTTGCA
JMFS112D02+ CGGCCCAGAGGGGTGGTGAACGCGCGTGGGGGTGGCGCGTGGGTTGCAGCTAGTCTCGA
JMFS011D10+ CGGCCCAGAGGGGTGGTGAACGCGCGTGGGGGTGGCGCGTGGGTTGCAGCTAGTCTCGAC
____________________________________________________________
consensus CGGCCCAGAGGGGTGGTGAACGCGCGTGGGGGTGGCGCGTGGGTTGCAGCTAGTCTCGAC