Previous Contig 002790:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN044D01Sequence503002790 (7)pir|T05165|T051651e-33hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi
JMSF015B10Sequence254002790 (7)gb:AP005127_18482544e-16Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJN771002790 (7)pir|T05165|T05165e-100hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi
JMSF023I09Sequence653002790 (7)pir|T05165|T051652e-83hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi755002790 (7)pir|T05165|T051657e-94hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi
JMSF052D24Sequence644002790 (7)pir|T05165|T051652e-82hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi902002790 (7)pir|T05165|T05165e-119hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi

Alignment

This contig is upended


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JMSF015B10-                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
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JMSF015B10-           GTCTCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCATACAGAAAAACCGAAGAG
JMSF052D24-              TCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCA-----AAAAACCGAAGAG
JMSF023I09-              TCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCATACAGAAAAACCGAAGAG
                      ____________________________________________________________
consensus             GTCTCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCATACAGAAAAACCGAAGAG
 
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JMSF015B10-           AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
JMSF052D24-           AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
JMSF023I09-           AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
rJMSF052D24+                                              TGTGTGCCTGATGCTANCCNTGCA
                      ____________________________________________________________
consensus             AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
 
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JMSF015B10-           TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
JMSF052D24-           TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
JMSF023I09-           TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
rJMSF052D24+          TTNCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAANGGAGCAAAA
                      ____________________________________________________________
consensus             TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
 
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JMSF015B10-           AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGNTTCCTATGTTGGTTT
JMSF052D24-           AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
JMSF023I09-           AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
rJMSF052D24+          AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
                      ____________________________________________________________
consensus             AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
 
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JMSF015B10-           AGTGGATTTTCTC                                               
JMSF052D24-           AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
JMSF023I09-           AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
rJMSF052D24+          AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
rJMSF015B10+                       GGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
rJMSF023I09+                                                            AAGAATGTTA
                      ____________________________________________________________
consensus             AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
 
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JMSF052D24-           TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
JMSF023I09-           TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
rJMSF052D24+          TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
rJMSF015B10+          TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
rJMSF023I09+          TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
                      ____________________________________________________________
consensus             TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
 
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JMSF052D24-           AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
JMSF023I09-           AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
rJMSF052D24+          AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
rJMSF015B10+          AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
rJMSF023I09+          AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
                      ____________________________________________________________
consensus             AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
 
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JMSF052D24-           GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
JMSF023I09-           GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
rJMSF052D24+          GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
rJMSF015B10+          GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
rJMSF023I09+          GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
                      ____________________________________________________________
consensus             GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
 
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JMSF052D24-           CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
JMSF023I09-           CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
rJMSF052D24+          CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
rJMSF015B10+          CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
rJMSF023I09+          CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
                      ____________________________________________________________
consensus             CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
 
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JMSF052D24-           ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
JMSF023I09-           ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
rJMSF052D24+          ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
rJMSF015B10+          ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
rJMSF023I09+          ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
                      ____________________________________________________________
consensus             ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
 
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JMSF052D24-           GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGC            
JMSF023I09-           GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAA        
rJMSF052D24+          GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
rJMSF015B10+          GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
rJMSF023I09+          GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
JMFN044D01+                                                CATGTGTTTGCAAAAGAGTTGGC
                      ____________________________________________________________
consensus             GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
 
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rJMSF052D24+          ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
rJMSF015B10+          ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
rJMSF023I09+          ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
JMFN044D01+           ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
                      ____________________________________________________________
consensus             ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
 
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rJMSF052D24+          GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
rJMSF015B10+          GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
rJMSF023I09+          GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
JMFN044D01+           GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
                      ____________________________________________________________
consensus             GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
 
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rJMSF052D24+          GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
rJMSF015B10+          GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
rJMSF023I09+          GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
JMFN044D01+           GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
                      ____________________________________________________________
consensus             GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
 
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rJMSF052D24+          CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
rJMSF015B10+          CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
rJMSF023I09+          CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
JMFN044D01+           CTTTTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
                      ____________________________________________________________
consensus             CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
 
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rJMSF052D24+          GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
rJMSF015B10+          GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
rJMSF023I09+          GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
JMFN044D01+           GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
                      ____________________________________________________________
consensus             GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
 
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rJMSF052D24+          TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTAT                      
rJMSF015B10+          TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATC 
rJMSF023I09+          TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATCA
JMFN044D01+           TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATCA
                      ____________________________________________________________
consensus             TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATCA
 
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rJMSF023I09+          TGAGTATAGATTTTGAATTC                                        
JMFN044D01+           TGAGTATAGATTTTGAATTCATGTTATGGAATGTGACTTAACGTAGTCTATTTATTTTGT
                      ____________________________________________________________
consensus             TGAGTATAGATTTTGAATTCATGTTATGGAATGTGACTTAACGTAGTCTATTTATTTTGT
 
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JMFN044D01+           GGTAGATTATAAATTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus             GGTAGATTATAAATTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC