clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN044D01 | Sequence | 503 | 002790 (7) | pir|T05165|T05165 | 1e-33 | hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi | |||||
JMSF015B10 | Sequence | 254 | 002790 (7) | gb:AP005127_1848254 | 4e-16 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJN | 771 | 002790 (7) | pir|T05165|T05165 | e-100 | hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi |
JMSF023I09 | Sequence | 653 | 002790 (7) | pir|T05165|T05165 | 2e-83 | hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi | 755 | 002790 (7) | pir|T05165|T05165 | 7e-94 | hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi |
JMSF052D24 | Sequence | 644 | 002790 (7) | pir|T05165|T05165 | 2e-82 | hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi | 902 | 002790 (7) | pir|T05165|T05165 | e-119 | hypothetical protein F18E5.190 - Arabidopsis thaliana>gb:ATCHRIV55_1545994 Arabi |
This contig is upended
. : . : . : . : . : . :
JMSF015B10- G
____________________________________________________________
consensus G
. : . : . : . : . : . :
JMSF015B10- GTCTCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCATACAGAAAAACCGAAGAG
JMSF052D24- TCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCA-----AAAAACCGAAGAG
JMSF023I09- TCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCATACAGAAAAACCGAAGAG
____________________________________________________________
consensus GTCTCGATCATAGCTACCAACCCCCCTTCCTTCATTCCTTCATACAGAAAAACCGAAGAG
. : . : . : . : . : . :
JMSF015B10- AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
JMSF052D24- AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
JMSF023I09- AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
rJMSF052D24+ TGTGTGCCTGATGCTANCCNTGCA
____________________________________________________________
consensus AATGGCGGGTGTGAACCTGACAATGACGGCTTGCACTGTGTGCCTGATGCTAACCTTGCA
. : . : . : . : . : . :
JMSF015B10- TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
JMSF052D24- TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
JMSF023I09- TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
rJMSF052D24+ TTNCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAANGGAGCAAAA
____________________________________________________________
consensus TTTCACGATACGCCTTGTATCACAACATCTTTCAGCATGGAAGAAACCAAAGGAGCAAAA
. : . : . : . : . : . :
JMSF015B10- AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGNTTCCTATGTTGGTTT
JMSF052D24- AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
JMSF023I09- AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
rJMSF052D24+ AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
____________________________________________________________
consensus AGCAATACTTATCATCATATTTATGGCTCCCTTGTATGCTGTTGTTTCCTATGTTGGTTT
. : . : . : . : . : . :
JMSF015B10- AGTGGATTTTCTC
JMSF052D24- AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
JMSF023I09- AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
rJMSF052D24+ AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
rJMSF015B10+ GGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
rJMSF023I09+ AAGAATGTTA
____________________________________________________________
consensus AGTGGATTTTCTCGGGAGCAACACTTTTTTCACATTTCTGGAGTCTGTCAAAGAATGTTA
. : . : . : . : . : . :
JMSF052D24- TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
JMSF023I09- TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
rJMSF052D24+ TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
rJMSF015B10+ TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
rJMSF023I09+ TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
____________________________________________________________
consensus TGAAGCTCTTGTTATGGCTAAGTTTTTAGGCTTGATGTACACATACCTAAATATATCCTT
. : . : . : . : . : . :
JMSF052D24- AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
JMSF023I09- AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
rJMSF052D24+ AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
rJMSF015B10+ AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
rJMSF023I09+ AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
____________________________________________________________
consensus AAGCAAAAACATAGTACCAGATGAGATTAAAGGAAGAGAGATTCACCACTCGTTTCCGAT
. : . : . : . : . : . :
JMSF052D24- GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
JMSF023I09- GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
rJMSF052D24+ GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
rJMSF015B10+ GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
rJMSF023I09+ GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
____________________________________________________________
consensus GACTCTCTTTCAGCCTCACACTGCCCGTTTAAACCACCACACATTGAAGCTTCTCAAGGA
. : . : . : . : . : . :
JMSF052D24- CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
JMSF023I09- CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
rJMSF052D24+ CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
rJMSF015B10+ CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
rJMSF023I09+ CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
____________________________________________________________
consensus CTGGACATGGCAATTTGTTTTGATCCGCCCTGTATGCTCTGTGTTAATGATAGCTCTACA
. : . : . : . : . : . :
JMSF052D24- ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
JMSF023I09- ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
rJMSF052D24+ ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
rJMSF015B10+ ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
rJMSF023I09+ ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
____________________________________________________________
consensus ACTTCTTGGAATGTATCCCACTTGGGTTAGCTGGACATTCACCATTATCCTAAACATTTC
. : . : . : . : . : . :
JMSF052D24- GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGC
JMSF023I09- GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAA
rJMSF052D24+ GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
rJMSF015B10+ GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
rJMSF023I09+ GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
JMFN044D01+ CATGTGTTTGCAAAAGAGTTGGC
____________________________________________________________
consensus GGTTTCGCTAGCTTTATACTCACTTGTAGTATTCTACCATGTGTTTGCAAAAGAGTTGGC
. : . : . : . : . : . :
rJMSF052D24+ ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
rJMSF015B10+ ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
rJMSF023I09+ ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
JMFN044D01+ ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
____________________________________________________________
consensus ACCACACAAGCCACTTGCCAAGTTTTTGTGTGTGAAAGGAATTGTCTTCTTCTGTTTCTG
. : . : . : . : . : . :
rJMSF052D24+ GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
rJMSF015B10+ GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
rJMSF023I09+ GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
JMFN044D01+ GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
____________________________________________________________
consensus GCAGGGAATTGCGCTCGAGATTCTTGTTGCCCTCGGGATAATAAAATCCCATCATGTCTG
. : . : . : . : . : . :
rJMSF052D24+ GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
rJMSF015B10+ GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
rJMSF023I09+ GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
JMFN044D01+ GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
____________________________________________________________
consensus GTTCGATGTGGAGCACATTCAAGAAGCTCTTCAGAATATGTTAGTGATGGTGGAGATGGT
. : . : . : . : . : . :
rJMSF052D24+ CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
rJMSF015B10+ CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
rJMSF023I09+ CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
JMFN044D01+ CTTTTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
____________________________________________________________
consensus CTTCTTCGCCATCGTTCAGCAGCATGCGTACACTGCAGAGCCTTACCGCAAAGAGAACAA
. : . : . : . : . : . :
rJMSF052D24+ GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
rJMSF015B10+ GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
rJMSF023I09+ GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
JMFN044D01+ GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
____________________________________________________________
consensus GAAGGACTAATTCCAAAGTTGGCGTGTATTTGTAATTTGTATTATCATATAAGAGTTGCT
. : . : . : . : . : . :
rJMSF052D24+ TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTAT
rJMSF015B10+ TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATC
rJMSF023I09+ TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATCA
JMFN044D01+ TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATCA
____________________________________________________________
consensus TGTCTAGTATTAGCCCCTGCAGATTCTGCTCTGGTTATTGTATTAGATAATTTATGATCA
. : . : . : . : . : . :
rJMSF023I09+ TGAGTATAGATTTTGAATTC
JMFN044D01+ TGAGTATAGATTTTGAATTCATGTTATGGAATGTGACTTAACGTAGTCTATTTATTTTGT
____________________________________________________________
consensus TGAGTATAGATTTTGAATTCATGTTATGGAATGTGACTTAACGTAGTCTATTTATTTTGT
. : . : . : . : . : . :
JMFN044D01+ GGTAGATTATAAATTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
____________________________________________________________
consensus GGTAGATTATAAATTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC