| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044L03 | Sequence | 520 | 002502 (7) | pir|T50532|T50532 | 7e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha | 519 | 002502 (7) | pir|T50532|T50532 | 7e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha |
| JMFN018D17 | Sequence | 496 | 002502 (7) | pir|T50532|T50532 | 7e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha | |||||
| JMFS155D03 | Sequence | 481 | 002502 (7) | pir|T50532|T50532 | 6e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha | |||||
| JMSF024G13 | Sequence | 502 | 002502 (7) | pir|T50532|T50532 | 7e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha | 443 | 002502 (7) | pir|T50532|T50532 | 5e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha |
| JMSF044C01 | Sequence | 505 | 002502 (7) | pir|T50532|T50532 | 7e-37 | ribosomal protein S27 - Arabidopsis thaliana>gb:ATT27I15_1555545 Arabidopsis tha | 709 | 002631 (5) | gb:AC105729_1738005 | 3e-50 | Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete se |
This contig is upended
. : . : . : . : . : . :
rJMFF044L03- AAGTAGCTACAGATGCATGTGCTAGTAAAAACTGAAT
JMSF024G13+ TGCTAGTAAAAACTGAAT
JMFS155D03+ AGTAAAAACTGAAT
JMFF044L03+ ACAATCAAGTAGCTACAGATGCATGTGCTAGTAAAAACTGAAT
JMSF044C01+ TGCTAGTAAAAACTGAAT
JMFN018D17+ CTAGTAAAAACTGAAT
____________________________________________________________
consensus ACAATCAAGTAGCTACAGATGCATGTGCTAGTAAAAACTGAAT
. : . : . : . : . : . :
rJMFF044L03- CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
JMSF024G13+ CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
JMFS155D03+ CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
rJMSF024G13- AACGCCGCAAATCTGAAACG
JMFF044L03+ CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
JMSF044C01+ CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
JMFN018D17+ CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
____________________________________________________________
consensus CTTTCATTCAATAACATAATCTGTCAGATGCATAATTTCAAACGCCGCAAATCTGAAACG
. : . : . : . : . : . :
rJMFF044L03- TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
JMSF024G13+ TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
JMFS155D03+ TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
rJMSF024G13- TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
JMFF044L03+ TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
JMSF044C01+ TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
JMFN018D17+ TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
____________________________________________________________
consensus TGAGTCTTAAAACAAATAAAATATCTATCAGAACTCAAAAATTAGGCATATCAGTTCCCC
. : . : . : . : . : . :
rJMFF044L03- ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
JMSF024G13+ ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
JMFS155D03+ ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
rJMSF024G13- ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
JMFF044L03+ ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
JMSF044C01+ ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
JMFN018D17+ ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
____________________________________________________________
consensus ATTAAACTTCAAACAGAAACAGGACAACGGTCTGTTATTAGTCACCCTTTCTTCTGAAAG
. : . : . : . : . : . :
rJMFF044L03- AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
JMSF024G13+ AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
JMFS155D03+ AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
rJMSF024G13- AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
JMFF044L03+ AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
JMSF044C01+ AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
JMFN018D17+ AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
____________________________________________________________
consensus AGCATCCCTCTGTGAGCCTGGCACGCCCACCAGTCGGCTGGCACAACACTGTCTGGCAGT
. : . : . : . : . : . :
rJMFF044L03- TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
JMSF024G13+ TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
JMFS155D03+ TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
rJMSF024G13- TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
JMFF044L03+ TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
JMSF044C01+ TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
JMFN018D17+ TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
____________________________________________________________
consensus TCCCACACACCACAACTGTCTGGGAGTGACTGAACACAGTTGTTATGTTAAAGCAGCCTT
. : . : . : . : . : . :
rJMFF044L03- GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
JMSF024G13+ GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
JMFS155D03+ GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
rJMSF024G13- GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
JMFF044L03+ GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
JMSF044C01+ GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
JMFN018D17+ GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
____________________________________________________________
consensus GGCACTTGACATCCATGAAGAAAGAGTTGGGAGACTGCACGAGACGCTTGAGCTTGTGCT
. : . : . : . : . : . :
rJMFF044L03- TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
JMSF024G13+ TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
JMFS155D03+ TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
rJMSF024G13- TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
JMFF044L03+ TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
JMSF044C01+ TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
JMFN018D17+ TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
____________________________________________________________
consensus TCTTCTTCTCGAGCTCGGCAGGAGGGTTCAACAAATCGATGTCGTTCGGTAGAACCATTG
. : . : . : . : . : . :
rJMFF044L03- TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCTAGC
JMSF024G13+ TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCT
JMFS155D03+ TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAG
rJMSF024G13- TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCT
JMFF044L03+ TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCTAGC
JMSF044C01+ TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCTAGC
JMFN018D17+ TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCTAGCAAA
____________________________________________________________
consensus TGTTGATGAACGAAAACCCTAGAACGCAAGCTGACGATAAGTTGAAGCTCCGCTAGCAAA