Previous Contig 002498:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016E16Sequence539005655 (4)gb:AY830138_16293461e-36Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence.744002498 (5)gb:PMA534442_17007024e-65Plantago major macronuclear mRNA for sucrose transporter (suc3 gene).
JMFF024L17Sequence547005655 (4)gb:AY830138_16293465e-36Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence.231002498 (5)
JMFF046N22Sequence475005655 (4)gb:AY830138_16293463e-37Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence.395002498 (5)gb:AY830138_16293460.031Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence.
JMFN017O14Sequence584002498 (5)gb:AF021809_17617368e-29Vitis vinifera putative sucrose transporter (VvSUC12) mRNA, complete cds.
JMSF016P16Sequence460005655 (4)gb:AY830138_16293463e-18Ipomoea batatas cultivar Beauregard clone BAC117E14, complete sequence.781002498 (5)gb:PMA534442_17007025e-63Plantago major macronuclear mRNA for sucrose transporter (suc3 gene).

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016E16+ T
                      ____________________________________________________________
consensus T
 
. : . : . : . : . : . :
rJMFF016E16+ TTATTGATCCGTTGTGCCAGATGATTGGTGCTAGACTGGTTTGGGCTGTGAGCAATTTTA
rJMSF016P16+ GTTGTGCCAGATGATTGGTGCTAGACTGGTTTGGGCTGTGAGCCATTTTA
                      ____________________________________________________________
consensus TTATTGATCCGTTGTGCCAGATGATTGGTGCTAGACTGGTTTGGGCTGTGAGCCATTTTA
 
. : . : . : . : . : . :
rJMFF016E16+ TGGTGCTTATGTGCATGGCAGGGACTACTGTTATTAGCTATGTTTCTCTTAATGAATCGT
rJMSF016P16+ TGGTGCTTATGTGCATGGCAGGGACTACTGTTATTAGCTATGTTTCTCTTAATGAATCGT
                      ____________________________________________________________
consensus TGGTGCTTATGTGCATGGCAGGGACTACTGTTATTAGCTATGTTTCTCTTAATGAATCGT
 
. : . : . : . : . : . :
rJMFF016E16+ CACAGGGAGTTCAACATGTTATTGGGGCGAGTGAATCAACTAAAGTTGCCTCGTTGATTG
rJMSF016P16+ CACAGGGAGTTCAACATGTTATTGGGGCGAGTGAATCAACTAAAGTTGCCTCGTTGATTG
                      ____________________________________________________________
consensus CACAGGGAGTTCAACATGTTATTGGGGCGAGTGAATCAACTAAAGTTGCCTCGTTGATTG
 
. : . : . : . : . : . :
rJMFF016E16+ TTTTTGCTCTTCTCGGCATTCCCCTTGCTATCACTTACAGTGTCCCTTTCTCCGTTACGG
rJMSF016P16+ TTTTTGCTCTTCTCGGCATTCCCCTTGCTATCACTTACAGTGTCCCTTTCTCCGTTACGG
                      ____________________________________________________________
consensus TTTTTGCTCTTCTCGGCATTCCCCTTGCTATCACTTACAGTGTCCCTTTCTCCGTTACGG
 
. : . : . : . : . : . :
rJMFF016E16+ CAGATTTGACTGCTGATGCTGGCGGTGGACAAGGTTTGGCCATAGGAGTTCTCAACCTCG
rJMSF016P16+ CAGATTTGACTGCTGATGCTGGCGGTGGACAAGGTTTGGCCATAGGAGTTCTCAACCTCG
JMFN017O14+ TGCTGGCGGTGGACAAGGTTTGGCCATAGGAGTTCTCAACCTCG
                      ____________________________________________________________
consensus CAGATTTGACTGCTGATGCTGGCGGTGGACAAGGTTTGGCCATAGGAGTTCTCAACCTCG
 
. : . : . : . : . : . :
rJMFF016E16+ CCATCGTTGTACCACAGATGGTTATCTCACTTGGTGCGGGTCCATGGGACGCCTTATTTG
rJMSF016P16+ CCATCGTTGTACCACAGATGGTTATCTCACTTGGTGCGGGTCCATGGGACGCCTTATTTG
JMFN017O14+ CCATCGTTGTACCACAGATGGTTATCTCACTTGGTGCGGGTCCATGGGACGCCTTATTTG
                      ____________________________________________________________
consensus CCATCGTTGTACCACAGATGGTTATCTCACTTGGTGCGGGTCCATGGGACGCCTTATTTG
 
. : . : . : . : . : . :
rJMFF016E16+ GCGGAGGGAACATACCCGCGTTTGCCCTGGCCTCTATATTCGCACTTGGGGCTGGTGTCA
rJMSF016P16+ GCGGAGGGAACATACCCGCGTTTGCCCTGGCCTCTATATTCGCACTTGGGGCTGGTGTCA
JMFN017O14+ GCGGAGGGAACATACCCGCGTTTGCCCTGGCCTCTATATTCGCACTTGGGGCTGGTGTCA
                      ____________________________________________________________
consensus GCGGAGGGAACATACCCGCGTTTGCCCTGGCCTCTATATTCGCACTTGGGGCTGGTGTCA
 
. : . : . : . : . : . :
rJMFF016E16+ TTGCTACACTCAAACTGCCTACTCTCTCGAGAAACGCGTTTAGATCAACCGGCCTTCATT
rJMSF016P16+ TTGCTACACTCAAACTGCCTACTCTCTCGAGAAACGCGTTTAGATCAACCGGCCTTCATT
rJMFF046N22+ ACACTCAAACTGCCTACTCTCTCGAGAAACGCGTTTAGATCAACCGGCCTTCATT
rJMFF024L17+ GAGAAACGCGTTTAGATCANCCGGCNTNCATN
JMFN017O14+ TTGCTACACTCAAACTGCCTACTCTCTCGAGAAACGCGTTTAGATCAACCGGCCTTCATT
                      ____________________________________________________________
consensus TTGCTACACTCAAACTGCCTACTCTCTCGAGAAACGCGTTTAGATCAACCGGCCTTCATT
 
. : . : . : . : . : . :
rJMFF016E16+ TTTGATAACCGATGAACCAAGAAAGCTTGCAATCCATAATGGTCCGTGCACTCCCACAAT
rJMSF016P16+ TTTGATAACCGATGAACCAAGAAAGCTTGCAATCCATAATGGTCCGTGCACTCCCACAAT
rJMFF046N22+ TTTGATAACCGATGAACCAAGAAAGCTTGCAATCCATAATGGTCCGTGCACTCCCACAAT
rJMFF024L17+ TTTGATAACCGATGAACCAAGAAAGCTNGCAATCCATAATGGTCCGTGCACTCCCACAAN
JMFN017O14+ TTTGATAACCGATGAACCAAGAAAGCTTGCAATCCATAATGGTCCGTGCACTCCCACAAT
                      ____________________________________________________________
consensus TTTGATAACCGATGAACCAAGAAAGCTTGCAATCCATAATGGTCCGTGCACTCCCACAAT
 
. : . : . : . : . : . :
rJMFF016E16+ CAATTCATTTTTTTTTCTCACAATTTTGGCAAGGGAACGACGTTCGAGGTGTAGAATATA
rJMSF016P16+ CAATTCATTTTTTTTTCTCACAATTTTGGCAAGGGAACGACGTTCGAGGTGTAGAATATA
rJMFF046N22+ CAATTCAT-TTTTTTTCTCACAATTTTGGCAAGGGAACGACGTTCGAGGTGTAGAATATA
rJMFF024L17+ CAATTCATNTTTTTTTCTCACAANNNTGGCAAGGNAACGACGTTCGAGGNGTAGAATATA
JMFN017O14+ CAATTCATTTTTTTTTCTCACAATTTTGGCAAGGGAACGACGTTCGAGGTGTAGAATATA
                      ____________________________________________________________
consensus CAATTCATTTTTTTTTCTCACAATTTTGGCAAGGGAACGACGTTCGAGGTGTAGAATATA
 
. : . : . : . : . : . :
rJMFF016E16+ TAATTACATTACAATTCATATAATGAAATACATGTAGTGACAGGATATTAGCTAGGTGCT
rJMSF016P16+ TAATTACATTACAATTCATATAATGAAATACATGTAGTGACAGGATATTAGCTAGGTGCT
rJMFF046N22+ TAATTACATTACAATTCATATAATGAAATACATGTAGTGACAGGATATTAGCTAGGTGCT
rJMFF024L17+ TAATTACATNACAANTCATATAATGAAATACATNTAGTGACAGNATATTAGCTAGGTGCT
JMFN017O14+ TAATTACATTACAATTCATATAATGAAATACATGTAGTGACAGGATATTAGCTAGGTGCT
                      ____________________________________________________________
consensus TAATTACATTACAATTCATATAATGAAATACATGTAGTGACAGGATATTAGCTAGGTGCT
 
. : . : . : . : . : . :
rJMFF016E16+ CTTTACAATTCTTTGTATGTGATCCATTAGTAGATATAGATGATCTGTTGTAAAAGGGCA
rJMSF016P16+ CTTTACAATTCTTTGTATGTGATCCATTAGTAGATATAGATGATCTGTTGTAAAAGGGCA
rJMFF046N22+ CTTTACAATTCTTTGTATGTGATCCATTAGTAGATATAGATGATCTGTTGTAAAAGGGCA
rJMFF024L17+ NTTTACAA
JMFN017O14+ CTTTACAATTCTTTGTATGTGATCCATTAGTAGATATAGATGATCTGTTGTAAAAGGGCA
                      ____________________________________________________________
consensus CTTTACAATTCTTTGTATGTGATCCATTAGTAGATATAGATGATCTGTTGTAAAAGGGCA
 
. : . : . : . : . : . :
rJMFF016E16+ AACTCTTTGGTCTGCCCACACTA
rJMSF016P16+ AACTCTTTGGTCTGCCCACACTATGTCTATAGACTATACTTGTATCATCTTTCACAATGC
rJMFF046N22+ AACTCTTTGGTCTGCCCACACTATGTCTATAGACTATACTTGTATCATCTTTCACAATGC
JMFN017O14+ AACTCTTTGGTCTGCCCACACTATGTCTATAGACTATACTTGTATCATCTTTCACAATGC
                      ____________________________________________________________
consensus AACTCTTTGGTCTGCCCACACTATGTCTATAGACTATACTTGTATCATCTTTCACAATGC
 
. : . : . : . : . : . :
rJMSF016P16+ ATACTATCACT
rJMFF046N22+ ATACTATCACTATACTTCTGTTT
JMFN017O14+ ATACTATCACTATACTTCTGTTTXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus ATACTATCACTATACTTCTGTTTNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC