| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004F23 | Sequence | 217 | 005461 (5) | 745 | 002489 (11) | gb:AF466824_1802370 | 3e-87 | Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds. | |||
| JMFF017A16 | Sequence | 406 | 005461 (5) | gb:AB009053_1510700 | 8e-20 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021 | 670 | 002489 (11) | gb:AB009053_1510700 | 3e-71 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021 |
| JMFF023D24 | Sequence | 266 | 008089 (2) | 713 | 002489 (11) | gb:AF466824_1802370 | 1e-85 | Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds. | |||
| JMFF031A14 | Sequence | 438 | 001840 (2) | gb:AC093018_1735826 | 4e-20 | Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence. | 683 | 002489 (11) | gb:AF466824_1802370 | 6e-62 | Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds. |
| JMFF043D07 | Sequence | 625 | 001840 (2) | gb:AB009053_1510700 | 2e-51 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021 | 517 | 002489 (11) | gb:AF466824_1802370 | 3e-58 | Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds. |
| JMFN017H05 | Sequence | 527 | 002489 (11) | gb:AJ843123_1814508 | 3e-23 | Plantago major partial mRNA for putative xanthine/uracil permease (xup1 gene). | |||||
| JMSF004G23 | Sequence | 162 | 005461 (5) | 388 | 002489 (11) | gb:AJ843123_1814508 | 4e-27 | Plantago major partial mRNA for putative xanthine/uracil permease (xup1 gene). | |||
| JMSF014E10 | Sequence | 210 | 005461 (5) | 803 | 002489 (11) | gb:AB009053_1510700 | 5e-82 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021 | |||
| JMSF022I11 | Sequence | 746 | 002489 (11) | gb:AF466824_1802370 | 3e-95 | Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds. | |||||
| JMSF046E18 | Sequence | 106 | 002489 (11) | gb:AJ843123_1814508 | 4e-10 | Plantago major partial mRNA for putative xanthine/uracil permease (xup1 gene). | |||||
| JMSF050G11 | Sequence | 171 | 005461 (5) | 766 | 002489 (11) | gb:AF466824_1802370 | 7e-75 | Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds. | |||
This contig is upended
. : . : . : . : . : . :
rJMSF022I11+ GGAACCGGATCTTCTGTATCTATTGAGAATGCTGGACT
rJMSF014E10+ TGAGAATGCTGGACT
____________________________________________________________
consensus GGAACCGGATCTTCTGTATCTATTGAGAATGCTGGACT
. : . : . : . : . : . :
rJMSF022I11+ TCTAGCGCTTACTCGAGTGGGGAGTCGAAGAGTTGTTCAGATATCCGCGGGATTCATGAT
rJMFF023D24+ AGTCGAAGAGTAGTCCAGATATCTGCTGGGTTCATGAT
rJMFF004F23+ TTACTCGAGTGGGGAGTCGAAGAGTTGTTCAGATATCCGCGGGATTCATGAT
rJMSF014E10+ TCTAGCGCTTACTCGAGT-GGGAGTCGAAGAGTTGTTCAGATATCCGC-GGATTCATGAT
____________________________________________________________
consensus TCTAGCGCTTACTCGAGTGGGGAGTCGAAGAGTTGTTCAGATATCCGCGGGATTCATGAT
. : . : . : . : . : . :
rJMSF022I11+ TTTCTTCTCTATTCTTGGAAAATTCGGAGCAGTCTTTGCTTCGATTCCAGCACCCATTGT
rJMFF017A16+ ATTCTTGGAAAATTCGGAGCAGTCTTTGCTTCGATTCCAGCACCCATTGT
rJMFF023D24+ TTTCTTTTCTATTCTTGGCAAATTTGGAGCCATCTTTGCTTCGATACCAGCACCAATAGT
rJMFF004F23+ TTTCTTCTCTATTCTTGGAAAATTCGGAGCAGTCTTTGCTTCGATTCCAGCACCCATTGT
rJMSF014E10+ TTTCTTCTCTATTCTTGGAAAATTCGGAGCAGTCTTTGCTTCGATTCCAGCACCCATTGT
rJMSF050G11+ AAATTCGGAGCAGTCTTTGCTTCGATTCCAGCACCCATTGT
____________________________________________________________
consensus TTTCTTCTCTATTCTTGGAAAATTCGGAGCAGTCTTTGCTTCGATTCCAGCACCCATTGT
. : . : . : . : . : . :
rJMSF022I11+ GGCTGCTTTATATTGCCTGTTCTTTGGATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
rJMFF017A16+ GGCTGCTTTATATTGCCTGTTCTTTGGATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
rJMFF043D07+ AGTTTGCTTCA
rJMFF023D24+ AGCCGCGTTATATTGTCTGTTCTTCGGTTATGTCGGTGCGGGGGGCTTAAGCTTCCTTCA
rJMFF004F23+ GGCTGCTTTATATTGCCTGTTCTTTGGATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
rJMSF014E10+ GGCTGCTTTATATTGCCTGTTCTTTGGATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
rJMFF031A14+ ATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
rJMSF050G11+ GGCTGCTTTATATTGCCTGTTCTTTGGATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
____________________________________________________________
consensus GGCTGCTTTATATTGCCTGTTCTTTGGATATGTAGGTGCTGGAGGCGTGAGTTTGCTTCA
. : . : . : . : . : . :
rJMSF022I11+ ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
rJMFF017A16+ ATTCTGCAACCCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
rJMFF043D07+ ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
rJMFF023D24+ GTTCTGCAA-TCTGAATAGTTTCCGAACCAAGTTCATACTAGGCTTTTCAATCTTTCTCG
rJMFF004F23+ ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
rJMSF014E10+ ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
rJMFF031A14+ ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
rJMSF050G11+ ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
____________________________________________________________
consensus ATTCTGCAA-CCTGAATAGTTTCCGGAACAAGTTCATACTCGGGTTTTCAATCTTTCTCG
. : . : . : . : . : . :
rJMSF022I11+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
rJMFF017A16+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
rJMFF043D07+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
rJMFF023D24+ GTTTATCCGTCCCTCAATACTTCAACGAGTACACAGTCATCGCTGGCTATGGACCCGTCC
rJMFF004F23+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
rJMSF014E10+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
rJMFF031A14+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
rJMSF050G11+ GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
____________________________________________________________
consensus GATTGTCTATCCCTCAGTACTTCAACGAGTACATTGCCATCAATAGTTATGGACCTGTTC
. : . : . : . : . : . :
rJMSF022I11+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
rJMFF017A16+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
rJMFF043D07+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
rJMSF004G23+ ATCGAAAGCTTTTG
rJMFF023D24+ ATACAAGCGGGAGATGGTTCAACGACATTGTGAACGTGCCATTCTCGTCGGAGGCTTTTG
rJMFF004F23+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
rJMSF014E10+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
rJMFF031A14+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
rJMSF050G11+ ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
____________________________________________________________
consensus ACACTGGCGGGAGATGGTTCAACGACATTGTGAATGTTCCGTTTTCATCGAAAGCTTTTG
. : . : . : . : . : . :
rJMSF022I11+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMFF017A16+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAGACCAGGTCA
rJMFF043D07+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMSF004G23+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMFF023D24+ TGGCGGGGATTCTGGCGTATTTCTTGGACAACACGATGCAC---AGGGATCATCAAATAA
rJMFF004F23+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMSF014E10+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMFF031A14+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMSF050G11+ TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
rJMSF046E18+ TTAGACANCNCGATGCACAAGAAGGAAANCCAGGTCA
JMFN017H05- TGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
____________________________________________________________
consensus TTGCGGGGATTGTGGCGTATTTCTTAGACACCACGATGCACAAGAAGGAAAACCAGGTCA
. : . : . : . : . : . :
rJMSF022I11+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMFF017A16+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMFF043D07+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMSF004G23+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMFF023D24+ GGAGGGACCGAGGCAAGCATTGGTGGGACAAGTTCAGGTCTTTCAAAACCGATACCCGAA
rJMFF004F23+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMSF014E10+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMFF031A14+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMSF050G11+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
rJMSF046E18+ GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACANGAA
JMFN017H05- GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
____________________________________________________________
consensus GGAAAGACCGAGGCAAGCATTGGTGGGACAAGTTCCGGTCTTTCAAGACCGACACAAGAA
. : . : . : . : . : . :
rJMSF022I11+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMFF017A16+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMFF043D07+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMSF004G23+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMFF023D24+ GCGAGGAATTCTACTCCCTCCCGTTCAACCTCAACAAGTATTTCCCGTC
rJMFF004F23+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMSF014E10+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMFF031A14+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMSF050G11+ GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
rJMSF046E18+ GCGAAGA
JMFN017H05- GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
____________________________________________________________
consensus GCGAAGAATTCTACTCCCTCCCTTTCAACCTCAACAAATACTTCCCGTCCGTCTGAATCT
. : . : . : . : . : . :
rJMSF022I11+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMFF017A16+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMFF043D07+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMSF004G23+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMFF004F23+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMSF014E10+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMFF031A14+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
rJMSF050G11+ CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
JMFN017H05- CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
____________________________________________________________
consensus CGCTACACCCAAGTAAGACCTCGTTTTCTCATCGAATCATCTCGTCGCCTCGTCGGGCTT
. : . : . : . : . : . :
rJMSF022I11+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMFF017A16+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMFF043D07+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMSF004G23+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMFF004F23+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMSF014E10+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMFF031A14+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
rJMSF050G11+ CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
JMFN017H05- CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
____________________________________________________________
consensus CGAAAAGCCATACTTGGGGCCTCCTGCAACACAGTTTTCCTTTGCTTATGTATCCCTTTT
. : . : . : . : . : . :
rJMSF022I11+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCT
rJMFF017A16+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
rJMFF043D07+ GGATGTGAAAAAAGGTTACTATAAATA
rJMSF004G23+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
rJMFF004F23+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
rJMSF014E10+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
rJMFF031A14+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
rJMSF050G11+ GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
JMFN017H05- GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
____________________________________________________________
consensus GGATGTGAAAAAA-GTTACTATAAATAGTCTGACAGCTTGGAGGATGCTTAATTAGAACA
. : . : . : . : . : . :
rJMFF017A16+ TTTGTTGATTAGGGTTTTTCT
rJMSF004G23+ TTTGTNGNTTAGGGT
rJMFF004F23+ TTTGTTGATTAGGGTTTTTCTTTTTAGTGTAAATT
rJMSF014E10+ TTTGTTGATTAGGGTTTTTCTTTTTAGTGTAAATTTGTTGGTTATTATGAACAACATTTC
rJMFF031A14+ TTTGTTGATTAGGGTTTTTCTTTTTAGTGTAAATTTGTTGGTTATTATGAACAACATTTC
rJMSF050G11+ TTTGTTGATTAGGGTTTTTCTTTTTAGTGTAAATTTGTTGGTTATTATGAACAACATTTC
JMFN017H05- TTTGTTGATTAGGGTTTTTCTTTTTAGTGTAAATTTGTTGGTTATTATGAACAACATTTC
____________________________________________________________
consensus TTTGTTGATTAGGGTTTTTCTTTTTAGTGTAAATTTGTTGGTTATTATGAACAACATTTC
. : . : . : . : . : . :
rJMSF014E10+ TCTGCAACTCTA
rJMFF031A14+ TCTGCAACTCTAGCACTGTTAAATGCCCCTGAAAAATGGAGACAATAATCCA
rJMSF050G11+ TCTGCAACTCTAGCACTGTTAAATGCCCCTGAAAAATGGAGACAATAATCCAATGGCCTC
JMFN017H05- TCTGCAACTCTAGCACTGTTAAATGCCCCTGAAAAATGGAGACAATAATCCAATGGCCTC
____________________________________________________________
consensus TCTGCAACTCTAGCACTGTTAAATGCCCCTGAAAAATGGAGACAATAATCCAATGGCCTC
. : . : . : . : . : . :
JMFN017H05- TGAAAGGCTAACATATCCACCACATAGCCTTTAAGTATGGTTATAAACAACGGTTAGCGC
____________________________________________________________
consensus TGAAAGGCTAACATATCCACCACATAGCCTTTAAGTATGGTTATAAACAACGGTTAGCGC