| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN013H19 | Sequence | 573 | 002427 (6) | sp|Q39230|SYS_ARATH | 2e-50 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 | |||||
| JMSF006I06 | Sequence | 332 | 008106 (5) | sp|Q39230|SYS_ARATH | 3e-25 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 | 549 | 002427 (6) | sp|Q39230|SYS_ARATH | 8e-62 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 |
| JMSF010J06 | Sequence | 332 | 008106 (5) | sp|Q39230|SYS_ARATH | 2e-13 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 | 769 | 002427 (6) | sp|Q39230|SYS_ARATH | 2e-99 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 |
| JMSF033B18 | Sequence | 697 | 008106 (5) | sp|O81983|SYS_HELAN | 1e-73 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3 | 755 | 002427 (6) | sp|Q39230|SYS_ARATH | 7e-86 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 |
| JMSF036E22 | Sequence | 699 | 008106 (5) | sp|O81983|SYS_HELAN | 1e-73 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3 | 687 | 002427 (6) | sp|Q39230|SYS_ARATH | 2e-73 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7 |
| JMSF052G03 | Sequence | 642 | 008106 (5) | sp|O81983|SYS_HELAN | 6e-49 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3 | 936 | 002427 (6) | sp|O81983|SYS_HELAN | e-128 | Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3 |
This contig is upended
. : . : . : . : . : . :
rJMSF052G03+ AATCATGTTTGCCCTTGATTTTTTGAGAAAAAG
____________________________________________________________
consensus AATCATGTTTGCCCTTGATTTTTTGAGAAAAAG
. : . : . : . : . : . :
rJMSF052G03+ GGGATACTCTCGGTTGCAAACTCCTTTCTTCATGAGGCAAGATATCATGGGAAAATGTGC
____________________________________________________________
consensus GGGATACTCTCGGTTGCAAACTCCTTTCTTCATGAGGCAAGATATCATGGGAAAATGTGC
. : . : . : . : . : . :
rJMSF052G03+ TCAACTAGCACAATTTGATGAGGAACTCTACAAGGTAACTGGTGAGGGAGATGACAAATA
____________________________________________________________
consensus TCAACTAGCACAATTTGATGAGGAACTCTACAAGGTAACTGGTGAGGGAGATGACAAATA
. : . : . : . : . : . :
rJMSF052G03+ TCTAATTGCGACATCTGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
rJMSF010J06+ TGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
____________________________________________________________
consensus TCTAATTGCGACATCTGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
. : . : . : . : . : . :
rJMSF052G03+ CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
rJMSF010J06+ CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
rJMSF036E22+ CGTAAAGAAGCTGGTTC
rJMSF033B18+ ATATGCAGGATNTTCGACTTGCTTTCGTAAAGAAGCTGGTTC
____________________________________________________________
consensus CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
. : . : . : . : . : . :
rJMSF052G03+ TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF010J06+ TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF036E22+ TCATGGCCGTGACACTCTTGGGA-TTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF033B18+ TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
____________________________________________________________
consensus TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
. : . : . : . : . : . :
rJMSF052G03+ TTGTATAACTAGCCCAAATGGCAATGACTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF010J06+ TTGTATAACTAGCCCAAATGGCAATGACTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF036E22+ TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF006I06+ AAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF033B18+ TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
____________________________________________________________
consensus TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
. : . : . : . : . : . :
rJMSF052G03+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF010J06+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF036E22+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF006I06+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF033B18+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
JMFN013H19- GATTCCCTATCATGTTGTTT-AATTGTTTCTGG
____________________________________________________________
consensus CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
. : . : . : . : . : . :
rJMSF052G03+ TGCATTAAATGATGCTGCTGCAAAGAAGTACGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF010J06+ TGCATTAAATGATGCTGCTGCAAAGAAGTACGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF036E22+ TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF006I06+ TGCANTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF033B18+ TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
JMFN013H19- TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
____________________________________________________________
consensus TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
. : . : . : . : . : . :
rJMSF052G03+ CACACACAGAGAACTTGTTTCATGCTCAAACTGCACCGATTACCAATCAAGAAGATTGGA
rJMSF010J06+ CACACACAGAGAACTTGTTTCATGCTCAAACTGCACCGATTACCAATCAAGAAGATTGGA
rJMSF036E22+ CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
rJMSF006I06+ CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTNCCAATCAAGAAGATTGGA
rJMSF033B18+ CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
JMFN013H19- CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
____________________________________________________________
consensus CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
. : . : . : . : . : . :
rJMSF052G03+ AATTCGGTATGGGCAGAAAAAGGGAAATGAGCAATCGGCGAAACAATATGTTCATTTATT
rJMSF010J06+ AATTCGGTATGGGCAGAAAAAGGGAAATGAGCAATCGGCGAAACAATATGTTCATTTATT
rJMSF036E22+ AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
rJMSF006I06+ AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
rJMSF033B18+ AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
JMFN013H19- AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
____________________________________________________________
consensus AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
. : . : . : . : . : . :
rJMSF052G03+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF010J06+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF036E22+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF006I06+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF033B18+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
JMFN013H19- GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
____________________________________________________________
consensus GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
. : . : . : . : . : . :
rJMSF052G03+ GAAGGATGGGGTGGAGGTCCCCCAAGTATTGCAACCTTACATGGGTGGAGTCACATTCCT
rJMSF010J06+ GAAGGATGGGGTGGAGGTCCCCCAAGTATTGCAACCTTACATGGGTGGAGTCACATTCCT
rJMSF036E22+ GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
rJMSF006I06+ GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
rJMSF033B18+ GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
JMFN013H19- GGAAGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
____________________________________________________________
consensus GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
. : . : . : . : . : . :
rJMSF052G03+ TCCGTTCAAGACCGTCCCAACTGGTAAAGATAAAAAATCCAAATGACCATTTACTTACTT
rJMSF010J06+ TCCGTTCAAGACCGTCCCAACTGGTAAAGATAAAAAATCCAAATGACCATTTACTTACTT
rJMSF036E22+ CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
rJMSF006I06+ CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
rJMSF033B18+ CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
JMFN013H19- CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
____________________________________________________________
consensus CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
. : . : . : . : . : . :
rJMSF052G03+ TCTAACGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAG
rJMSF010J06+ TCTAACGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAG
rJMSF036E22+ TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
rJMSF006I06+ TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
rJMSF033B18+ TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
JMFN013H19- TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
____________________________________________________________
consensus TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
. : . : . : . : . : . :
rJMSF036E22+ GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
rJMSF006I06+ GTTTTAGAAGATATAACTTNAGAATGAT
rJMSF033B18+ GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
JMFN013H19- GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
____________________________________________________________
consensus GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
. : . : . : . : . : . :
rJMSF036E22+ GACTGATT
rJMSF033B18+ GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGA
JMFN013H19- GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGATAC
____________________________________________________________
consensus GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGATAC