clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF003I12 | Sequence | 558 | 002303 (3) | gb:AY150376_1584941 | 4e-64 | Arabidopsis thaliana putative formamidase (At4g37560) mRNA, complete cds. | 625 | 009611 (3) | pir|T04712|T04712 | 4e-84 | probable formamidase (EC 3.5.1.49) F19F18.40 - Arabidopsis thaliana>gb:ATCHRIV87 |
JMFF041H18 | Sequence | 657 | 002303 (3) | gb:AY150376_1584941 | 2e-82 | Arabidopsis thaliana putative formamidase (At4g37560) mRNA, complete cds. | 595 | 021611 | pir|T04712|T04712 | 2e-72 | probable formamidase (EC 3.5.1.49) F19F18.40 - Arabidopsis thaliana>gb:ATCHRIV87 |
JMFN006M18 | Sequence | 617 | 002303 (3) | gb:AY150376_1584941 | 5e-18 | Arabidopsis thaliana putative formamidase (At4g37560) mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
JMFF041H18+ TTCAAGCTCTCTTTCCCTATCATTCCATATCTGAAGCAATTCT
____________________________________________________________
consensus TTCAAGCTCTCTTTCCCTATCATTCCATATCTGAAGCAATTCT
. : . : . : . : . : . :
JMFF041H18+ TTTGAAGGTGCTGTTCCTATTATCNCAGGGTGGGTTAAACCAGGAAACCTCACACCTGGA
JMFF003I12+ TGGA
____________________________________________________________
consensus TTTGAAGGTGCTGTTCCTATTATCNCAGGGTGGGTTAAACCAGGAAACCTCACACCTGGA
. : . : . : . : . : . :
JMFF041H18+ ATATGAGGTGAGTATGCATATATGCCTTCAAAGTACCAAATAGCTTTGGCCGCACAAGGA
JMFF003I12+ ATATGAGGTGAGTATGCATATATGCCTTCAAAGTACCAAATAGCTTTGGCCGCACAAGGA
____________________________________________________________
consensus ATATGAGGTGAGTATGCATATATGCCTTCAAAGTACCAAATAGCTTTGGCCGCACAAGGA
. : . : . : . : . : . :
JMFF041H18+ AAGTGATCAGTTAGAAATCCACCACCGTTCTCTCGGTCAAATATTGCTGTATAACCCCAT
JMFF003I12+ AAGTGATCAGTTAGAAATCCACCACCGTTCTCTCGGTCAAATATTGCTGTATAACCCCAT
____________________________________________________________
consensus AAGTGATCAGTTAGAAATCCACCACCGTTCTCTCGGTCAAATATTGCTGTATAACCCCAT
. : . : . : . : . : . :
JMFF041H18+ TCATCCCCAGGGAGAGGCCCCAAATTGCAAATTTCAACAGCAAGAAGGTCACCTGGCTTT
JMFF003I12+ TCATCCCCAGGGAGAGGCCCCAAATTGCAAATTTCAACAGCAAGAAGGTCACCTGGCTTT
____________________________________________________________
consensus TCATCCCCAGGGAGAGGCCCCAAATTGCAAATTTCAACAGCAAGAAGGTCACCTGGCTTT
. : . : . : . : . : . :
JMFF041H18+ GCTGGGATTCCATCAGTGTATACAATTCTGATAGGCCCACTGAGATAGTGCACAACAGAT
JMFF003I12+ GCTGGGATTCCATCAGTGTATACAATTCTGATAGGCCCACTGAGATAGTGCACAACAGAT
JMFN006M18+ AACAGAT
____________________________________________________________
consensus GCTGGGATTCCATCAGTGTATACAATTCTGATAGGCCCACTGAGATAGTGCACAACAGAT
. : . : . : . : . : . :
JMFF041H18+ TGATCAGCATACTTGATATCCTGAGCCGTGTATTGTGATGTTATTCCCCCACCGCTAAAA
JMFF003I12+ TGATCAGCATACTTGATATCCTGAGCCGTGTATTGTGATGTTATTCCCCCACCGCTAAAA
JMFN006M18+ TGATCAGCATACTTGATATCCTGAGCCGTGTATTGTGATGTTATTCCCCCACCGCTAAAA
____________________________________________________________
consensus TGATCAGCATACTTGATATCCTGAGCCGTGTATTGTGATGTTATTCCCCCACCGCTAAAA
. : . : . : . : . : . :
JMFF041H18+ TCCACCATCTCCACCCTGAACAACTCCCCTTCTTTCACCTCTGCAACTGGAGGTATATCC
JMFF003I12+ TCCACCATCTCCACCCTGAACAACTCCCCTTCTTTCACCTCTGCAACTGGAGGTATATCC
JMFN006M18+ TCCACCATCTCCACCCTGAACAACTCCCCTTCTTTCACCTCTGCAACTGGAGGTATATCC
____________________________________________________________
consensus TCCACCATCTCCACCCTGAACAACTCCCCTTCTTTCACCTCTGCAACTGGAGGTATATCC
. : . : . : . : . : . :
JMFF041H18+ GGGTGCCACCGGTTGTGCAGTGGCGGGTTTTGCTCCCGTGGCTTCTTCTTCACATCAATA
JMFF003I12+ GGGTGCCACCGGTTGTGCAGTGGCGGGTTTTGCTCCCGTGGCTTCTTCTTCACATCAATA
JMFN006M18+ GGGTGCCACTGGTTGTGCAGTGGCGGGTTTTGCTCCCGTGGCTTCTTCTTCACATCAATA
____________________________________________________________
consensus GGGTGCCACCGGTTGTGCAGTGGCGGGTTTTGCTCCCGTGGCTTCTTCTTCACATCAATA
. : . : . : . : . : . :
JMFF041H18+ GGCACAACCAGTCTTGGGCCTTGTAAAGCCATAGCCAACCTCAACCTCTGGTGATTAACT
JMFF003I12+ GGCACAACCAGTCTTGGGCCTTGTAAAGCCATAGCCAACCTCAACCTCTGGTGATTAACT
JMFN006M18+ GGCACAACCAGTCTTGGGCCTTGTAAAGCCATAGCCAACCTCAACCTCTGGTGATTAACT
____________________________________________________________
consensus GGCACAACCAGTCTTGGGCCTTGTAAAGCCATAGCCAACCTCAACCTCTGGTGATTAACT
. : . : . : . : . : . :
JMFF041H18+ TAGCTGAAGCTAATAGAACTATACCGACAAAGGAAGAATCCACGGAGAGATTGAAGTGTC
JMFF003I12+ TAGCTGAAGCTAATAGAACTATACCGACAAAGGAAGAATCCACGGAGAGATTGAAGTGTC
JMFN006M18+ TAGCTGAAGCTAATAGAACTATACCGACAAAGGAAGAATCCACGGAGAGATTGAAGTGTC
____________________________________________________________
consensus TAGCTGAAGCTAATAGAACTATACCGACAAAGGAAGAATCCACGGAGAGATTGAAGTGTC
. : . : . : . : . : . :
JMFF041H18+ TATGGACTTAGGCC
JMFF003I12+ TATGGACTTAGGCC
JMFN006M18+ TATGGACTTAGGCCAATCCCTTCTCTTCATTTTCAGACATTGATGGGTGCTTGGGGTGGA
____________________________________________________________
consensus TATGGACTTAGGCCAATCCCTTCTCTTCATTTTCAGACATTGATGGGTGCTTGGGGTGGA
. : . : . : . : . : . :
JMFN006M18+ AGCCTTTTCCCTCGTAGTGGGACGAATGGGGGCCACCTTTGGGCTATGGGCTTTGGTTCA
____________________________________________________________
consensus AGCCTTTTCCCTCGTAGTGGGACGAATGGGGGCCACCTTTGGGCTATGGGCTTTGGTTCA