Previous Contig 002157:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050H11Sequence578002157 (2)631010995 (2)gb:AC133859_17415301e-09Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
JMSF011G22Sequence255002157 (2)719010995 (2)gb:AE005172_8910345e-11Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC069251_154073

Alignment

This contig is upended


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JMFF050H11+ CTGTCACTTGAATTTGAGCTTGCTTCATTTCTCTAGAA
                      ____________________________________________________________
consensus CTGTCACTTGAATTTGAGCTTGCTTCATTTCTCTAGAA
 
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JMFF050H11+ AGATCGGCAATCTTCTTCTGAAGATCGGGAATGGCGGCGAGAGCGGAGTCGAGCAGCGCC
                      ____________________________________________________________
consensus AGATCGGCAATCTTCTTCTGAAGATCGGGAATGGCGGCGAGAGCGGAGTCGAGCAGCGCC
 
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JMFF050H11+ AACCACCCGCCGATGGCTAACGTGCGCTCTTGAAGCGACGCGCGCAGCGATTGACAGTTA
                      ____________________________________________________________
consensus AACCACCCGCCGATGGCTAACGTGCGCTCTTGAAGCGACGCGCGCAGCGATTGACAGTTA
 
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JMFF050H11+ ATCAGCACGAAAATCTTACTCTTACGCCTGTAAACCGCCAGCGCCTCCGCCCCCTGCCTG
                      ____________________________________________________________
consensus ATCAGCACGAAAATCTTACTCTTACGCCTGTAAACCGCCAGCGCCTCCGCCCCCTGCCTG
 
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JMSF011G22+ CTGCACGGCCGCCGAAACATCCGCNTCCGGC
JMFF050H11+ AGATCGCCGGCGATTCCTTTCAACGACGTCTGCACGGCCGCCGAAACATCCGCCTCCGGC
                      ____________________________________________________________
consensus AGATCGCCGGCGATTCCTTTCAACGACGTCTGCACGGCCGCCGAAACATCCGCCTCCGGC
 
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JMSF011G22+ CTCAACGTCCGGAGCAGCTGCCCCAGCACCAGCTGCAGCCGCTTCACGTACCCCGAGAAC
JMFF050H11+ CTCAACGTCCGGAGCAGCTGCCCCAGCACCAGCTGCAGCCGCTTCACGTACCCCGAGAAC
                      ____________________________________________________________
consensus CTCAACGTCCGGAGCAGCTGCCCCAGCACCAGCTGCAGCCGCTTCACGTACCCCGAGAAC
 
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JMSF011G22+ CGCCGCGCGTTCTCCCACGCGTACTGGTGCTCGTCGCCGGCTTCCGCGAACTCCGACAGC
JMFF050H11+ CGCCGCGCGTTCTCCCACGCGTACTGGTGCTCGTCGCCGGCTTCCGCGAACTCCGACAGC
                      ____________________________________________________________
consensus CGCCGCGCGTTCTCCCACGCGTACTGGTGCTCGTCGCCGGCTTCCGCGAACTCCGACAGC
 
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JMSF011G22+ AAGCCCTGGAGTGATTCCACTACAACTAGCGTTGACATGATTCGCCGGCGAGGTCAACCG
JMFF050H11+ AAGCCCTGGAGTGATTCCACTACAACTAGCGTTGACATGATTCGCCGGCGAGGTCAACCG
                      ____________________________________________________________
consensus AAGCCCTGGAGTGATTCCACTACAACTAGCGTTGACATGATTCGCCGGCGAGGTCAACCG
 
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JMSF011G22+ CGTGCAATGATTCAAGGATCGCGTTGAACCGACCGAAAACTTC
JMFF050H11+ CGTGCAATGATTCAAGGATCGCGTTGAACCGACCGAAAACTTCGCAACCGTATACGCAAT
                      ____________________________________________________________
consensus CGTGCAATGATTCAAGGATCGCGTTGAACCGACCGAAAACTTCGCAACCGTATACGCAAT
 
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JMFF050H11+ TGAATGTGAAGAAAAAAGCGCAAGACATTACTGCAGTGGTTGACTTCTGCAATTCGCGCC
                      ____________________________________________________________
consensus TGAATGTGAAGAAAAAAGCGCAAGACATTACTGCAGTGGTTGACTTCTGCAATTCGCGCC