Previous Contig 002054:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035K11Sequence571002054 (3)gb:AP004765_18446739e-45Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P071591010799 (5)gb:AB007646_15101702e-40Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGI19.
JMFF048C20Sequence397002054 (3)gb:AP004765_18446730.002Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P071273010799 (5)
JMFF048M20Sequence364002054 (3)310010799 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF035K11+ GAGAAGAAAGGTCTCAAGACCCCATGCTCCCCTATCGACATA
                      ____________________________________________________________
consensus GAGAAGAAAGGTCTCAAGACCCCATGCTCCCCTATCGACATA
 
. : . : . : . : . : . :
JMFF035K11+ GTCCCCATTGAACACAAAGAACCGATCCTCACCTGGAAACCCAGCGTCCCTCAACAGAAA
                      ____________________________________________________________
consensus GTCCCCATTGAACACAAAGAACCGATCCTCACCTGGAAACCCAGCGTCCCTCAACAGAAA
 
. : . : . : . : . : . :
JMFF035K11+ AAGCACGTCGTGCAGCTGCCCATGAACATCCCCGACCACCACGACACGGGAACCCGGGCC
                      ____________________________________________________________
consensus AAGCACGTCGTGCAGCTGCCCATGAACATCCCCGACCACCACGACACGGGAACCCGGGCC
 
. : . : . : . : . : . :
JMFF035K11+ CAGACCCGACCCATCATCGATCCCGACACAATTGGGCTCCTTATGCAGGATCTTCGAGGC
                      ____________________________________________________________
consensus CAGACCCGACCCATCATCGATCCCGACACAATTGGGCTCCTTATGCAGGATCTTCGAGGC
 
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JMFF035K11+ CGTGAGGACAAGGCGATCGAAGACCTCGACGGGGAGAACGGTGGGGAGATCCGCGGGGGG
                      ____________________________________________________________
consensus CGTGAGGACAAGGCGATCGAAGACCTCGACGGGGAGAACGGTGGGGAGATCCGCGGGGGG
 
. : . : . : . : . : . :
JMFF035K11+ CAGATTCCTGGAAGCCCAGTCGAAGGTCAGCATAAGGTCCGTGACCCAATCTAGGGTTAA
JMFF048M20+ TTAA
JMFF048C20+ AAGGTCAGCATAAGGTCCGTGACCCAATCTAGGGTTAA
                      ____________________________________________________________
consensus CAGATTCCTGGAAGCCCAGTCGAAGGTCAGCATAAGGTCCGTGACCCAATCTAGGGTTAA
 
. : . : . : . : . : . :
JMFF035K11+ GATTCCGTCTTCC-GGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
JMFF048M20+ GATTCCGTCTTCCGGGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
JMFF048C20+ GATTCCGTCTTCC-GGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
                      ____________________________________________________________
consensus GATTCCGTCTTCC-GGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
 
. : . : . : . : . : . :
JMFF035K11+ TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
JMFF048M20+ TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
JMFF048C20+ TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
                      ____________________________________________________________
consensus TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
 
. : . : . : . : . : . :
JMFF035K11+ AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
JMFF048M20+ AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
JMFF048C20+ AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
                      ____________________________________________________________
consensus AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
 
. : . : . : . : . : . :
JMFF035K11+ CTGAGGACGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCA
JMFF048M20+ CTGAGGATGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCAGTAATGGACGAA
JMFF048C20+ CTGAGGATGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCAGTAATGGACGAA
                      ____________________________________________________________
consensus CTGAGGATGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCAGTAATGGACGAA
 
. : . : . : . : . : . :
JMFF048M20+ AATGGCGATTTTTTTTTTCCGTTTTCCTTTTAAATTTTTTATATTTTATTTTATTTTTTG
JMFF048C20+ AATGGCGATTTTTTTTTTCCGTTTTCCTTTTAAATTTTTTATATTTTATTTTATTTTTTG
                      ____________________________________________________________
consensus AATGGCGATTTTTTTTTTCCGTTTTCCTTTTAAATTTTTTATATTTTATTTTATTTTTTG
 
. : . : . : . : . : . :
JMFF048M20+ GGGGTTATTTTAAAGAGAAATTATTGGGTCTGTAAGGTAGAAGAAGAAGAAGTTGAAGGC
JMFF048C20+ GGGGTTATTTTAAAGAGAAATTATTGGGTCTGTAAGGTAGAAGAAGAAGAAGTTGAAGGC
                      ____________________________________________________________
consensus GGGGTTATTTTAAAGAGAAATTATTGGGTCTGTAAGGTAGAAGAAGAAGAAGTTGAAGGC