clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF035K11 | Sequence | 571 | 002054 (3) | gb:AP004765_1844673 | 9e-45 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P071 | 591 | 010799 (5) | gb:AB007646_1510170 | 2e-40 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGI19. |
JMFF048C20 | Sequence | 397 | 002054 (3) | gb:AP004765_1844673 | 0.002 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P071 | 273 | 010799 (5) | |||
JMFF048M20 | Sequence | 364 | 002054 (3) | 310 | 010799 (5) |
This contig is upended
. : . : . : . : . : . :
JMFF035K11+ GAGAAGAAAGGTCTCAAGACCCCATGCTCCCCTATCGACATA
____________________________________________________________
consensus GAGAAGAAAGGTCTCAAGACCCCATGCTCCCCTATCGACATA
. : . : . : . : . : . :
JMFF035K11+ GTCCCCATTGAACACAAAGAACCGATCCTCACCTGGAAACCCAGCGTCCCTCAACAGAAA
____________________________________________________________
consensus GTCCCCATTGAACACAAAGAACCGATCCTCACCTGGAAACCCAGCGTCCCTCAACAGAAA
. : . : . : . : . : . :
JMFF035K11+ AAGCACGTCGTGCAGCTGCCCATGAACATCCCCGACCACCACGACACGGGAACCCGGGCC
____________________________________________________________
consensus AAGCACGTCGTGCAGCTGCCCATGAACATCCCCGACCACCACGACACGGGAACCCGGGCC
. : . : . : . : . : . :
JMFF035K11+ CAGACCCGACCCATCATCGATCCCGACACAATTGGGCTCCTTATGCAGGATCTTCGAGGC
____________________________________________________________
consensus CAGACCCGACCCATCATCGATCCCGACACAATTGGGCTCCTTATGCAGGATCTTCGAGGC
. : . : . : . : . : . :
JMFF035K11+ CGTGAGGACAAGGCGATCGAAGACCTCGACGGGGAGAACGGTGGGGAGATCCGCGGGGGG
____________________________________________________________
consensus CGTGAGGACAAGGCGATCGAAGACCTCGACGGGGAGAACGGTGGGGAGATCCGCGGGGGG
. : . : . : . : . : . :
JMFF035K11+ CAGATTCCTGGAAGCCCAGTCGAAGGTCAGCATAAGGTCCGTGACCCAATCTAGGGTTAA
JMFF048M20+ TTAA
JMFF048C20+ AAGGTCAGCATAAGGTCCGTGACCCAATCTAGGGTTAA
____________________________________________________________
consensus CAGATTCCTGGAAGCCCAGTCGAAGGTCAGCATAAGGTCCGTGACCCAATCTAGGGTTAA
. : . : . : . : . : . :
JMFF035K11+ GATTCCGTCTTCC-GGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
JMFF048M20+ GATTCCGTCTTCCGGGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
JMFF048C20+ GATTCCGTCTTCC-GGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
____________________________________________________________
consensus GATTCCGTCTTCC-GGCCATGAAATGGGGATCTGCGGCGCCGAGGGAGAGCGCGAGGGAG
. : . : . : . : . : . :
JMFF035K11+ TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
JMFF048M20+ TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
JMFF048C20+ TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
____________________________________________________________
consensus TCAAATTATTCTGCTTCTCCTCTTCGGATGAAGAAGAGGTGGAGGGTACGGAGGCTGAGG
. : . : . : . : . : . :
JMFF035K11+ AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
JMFF048M20+ AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
JMFF048C20+ AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
____________________________________________________________
consensus AAAAGAAGTCCTCGTCCGAAGACGGCGGTTGTGGAGGCGGCGGCGGCGCCGCCTCAGGAG
. : . : . : . : . : . :
JMFF035K11+ CTGAGGACGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCA
JMFF048M20+ CTGAGGATGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCAGTAATGGACGAA
JMFF048C20+ CTGAGGATGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCAGTAATGGACGAA
____________________________________________________________
consensus CTGAGGATGGAAGTGCTGACGCTGCTGCTGAGTCTGAGAGCATGGTCAGTAATGGACGAA
. : . : . : . : . : . :
JMFF048M20+ AATGGCGATTTTTTTTTTCCGTTTTCCTTTTAAATTTTTTATATTTTATTTTATTTTTTG
JMFF048C20+ AATGGCGATTTTTTTTTTCCGTTTTCCTTTTAAATTTTTTATATTTTATTTTATTTTTTG
____________________________________________________________
consensus AATGGCGATTTTTTTTTTCCGTTTTCCTTTTAAATTTTTTATATTTTATTTTATTTTTTG
. : . : . : . : . : . :
JMFF048M20+ GGGGTTATTTTAAAGAGAAATTATTGGGTCTGTAAGGTAGAAGAAGAAGAAGTTGAAGGC
JMFF048C20+ GGGGTTATTTTAAAGAGAAATTATTGGGTCTGTAAGGTAGAAGAAGAAGAAGTTGAAGGC
____________________________________________________________
consensus GGGGTTATTTTAAAGAGAAATTATTGGGTCTGTAAGGTAGAAGAAGAAGAAGTTGAAGGC