Previous Contig 002017:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047G14Sequence354002017 (2)gb:AP003573_18311001e-10Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P052269010731 (4)gb:AY065068_15662224e-04Arabidopsis thaliana AT4g37250/C7A10_110 mRNA, complete cds.>gb:BT002237_1635840
JMSF036G23Sequence652002017 (2)gb:AY065068_15662227e-53Arabidopsis thaliana AT4g37250/C7A10_110 mRNA, complete cds.>gb:BT002237_1635840574010731 (4)pir|T00502|T005026e-33probable receptor-like protein kinase At2g23300 [imported] - Arabidopsis thalian

Alignment

This contig is upended


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JMSF036G23+ GGGAGGCAGAGATCCGTTTATCAAATTAGAAGACAGA
                      ____________________________________________________________
consensus GGGAGGCAGAGATCCGTTTATCAAATTAGAAGACAGA
 
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JMSF036G23+ TCTAAAACCTCGACGGAGTCGAATCCGCCCGGAAGTCTCCCGGAAAAGTAATTATCTTTC
                      ____________________________________________________________
consensus TCTAAAACCTCGACGGAGTCGAATCCGCCCGGAAGTCTCCCGGAAAAGTAATTATCTTTC
 
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JMSF036G23+ AGAGAAATGCCCGTCAGATTCCTCAAACTCGTCAAATTTTCCGGCACTACCCCGGTGAAG
                      ____________________________________________________________
consensus AGAGAAATGCCCGTCAGATTCCTCAAACTCGTCAAATTTTCCGGCACTACCCCGGTGAAG
 
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JMSF036G23+ GCGTTCCCGGAGAGATTGAGAGAGCGGAGACTCTTGAGACACCCAACAACCTCCGGCAAC
                      ____________________________________________________________
consensus GCGTTCCCGGAGAGATTGAGAGAGCGGAGACTCTTGAGACACCCAACAACCTCCGGCAAC
 
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JMSF036G23+ TCACCGGACATCCGGTTGTCAGAAAAATCAAGACTTTCAAGCTCGGAAGCATTAAACAGA
                      ____________________________________________________________
consensus TCACCGGACATCCGGTTGTCAGAAAAATCAAGACTTTCAAGCTCGGAAGCATTAAACAGA
 
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JMSF036G23+ GTCAACGGAATAGACCCATTGATTGAATTATTGGAAAGATCAAGATTTCTGAGATGCTGA
                      ____________________________________________________________
consensus GTCAACGGAATAGACCCATTGATTGAATTATTGGAAAGATCAAGATTTCTGAGATGCTGA
 
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JMSF036G23+ ATCATACCAAGACTAGAAGGGATAGACCCAACAAGCTGAAAACCAGGAAGAGCCAAGCCG
                      ____________________________________________________________
consensus ATCATACCAAGACTAGAAGGGATAGACCCAACAAGCTGAAAACCAGGAAGAGCCAAGCCG
 
. : . : . : . : . : . :
JMSF036G23+ GTGACACGACGACCGTCGCCGGAAACATTAGCCACCACCTCACAATCAACGCCTTTCCAA
JMFF047G14+ CGACGACCGTCGCCGGAAACATTAGCCACCACCTCACAATCAACGCCTNTCCAA
                      ____________________________________________________________
consensus GTGACACGACGACCGTCGCCGGAAACATTAGCCACCACCTCACAATCAACGCCTTTCCAA
 
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JMSF036G23+ GAACAGGGAACCTCATCTCCGGCATTCCAGCCTCCCAAAACACTAAACGGATCACTAACA
JMFF047G14+ GAACAGGGAACCTCATCTCCGGCATTCCAGCCTCCCAAAACACTAAACGGATCACTAACA
                      ____________________________________________________________
consensus GAACAGGGAACCTCATCTCCGGCATTCCAGCCTCCCAAAACACTAAACGGATCACTAACA
 
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JMSF036G23+ ACACTGAACTTGAAACTCATCAGCAGAACTCCATCAGTGTTGAGCCCAAGCGACTGAACA
JMFF047G14+ ACACTGAACTTGAAACTCATCAGCAGAACTCCATCAGTGTTGAGCCCAAGCGACTGAACA
                      ____________________________________________________________
consensus ACACTGAACTTGAAACTCATCAGCAGAACTCCATCAGTGTTGAGCCCAAGCGACTGAACA
 
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JMSF036G23+ CCAAAGAGAATCAACGCCGCAAGAACTCTCCACCAAAAGCCCTGGAAAATCATGGCGTCT
JMFF047G14+ CCAAAGAGAATCAACGCCGCAAGAACTCTCCACCAAAAGCCCTGGAAAATCATGGCGTCT
                      ____________________________________________________________
consensus CCAAAGAGAATCAACGCCGCAAGAACTCTCCACCAAAAGCCCTGGAAAATCATGGCGTCT
 
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JMSF036G23+ GAAACCGCTCCCGC
JMFF047G14+ GAAACCGCTCCCGCATCTCTGATCTTCCGGAATACTAAGGAAGGAGATAAGATAAAGAAG
                      ____________________________________________________________
consensus GAAACCGCTCCCGCATCTCTGATCTTCCGGAATACTAAGGAAGGAGATAAGATAAAGAAG
 
. : . : . : . : . : . :
JMFF047G14+ AGAAGGTTAAGTGAGATTTATGACAGTGGTGTCGTCAAGGAGACCATGGAAAGACAAGGT
                      ____________________________________________________________
consensus AGAAGGTTAAGTGAGATTTATGACAGTGGTGTCGTCAAGGAGACCATGGAAAGACAAGGT