Previous Contig 002005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047B03Sequence645002005 (3)gb:AP004855_18460361e-56Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ15260010700 (3)pir|E86334|E863341e-08hypothetical protein T20H2.13 [imported] - Arabidopsis thaliana>gb:AE005172_8909
JMSF005K01Sequence396002005 (3)gb:AP004855_18460364e-28Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ15479010700 (3)gb:AY835402_16303403e-51Brassica napus clone BnY2H109 protein kinase C conserved region 2 mRNA, partial
JMSF011D03Sequence296002005 (3)gb:AP004855_18460360.003Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ15731010700 (3)gb:AP006149_18609464e-77Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B127

Alignment

This contig is upended


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JMFF047B03+ TGAGTAGTTGCTTTCAACCCAAATGCTTAACAGCACCCAGTACCA
                      ____________________________________________________________
consensus TGAGTAGTTGCTTTCAACCCAAATGCTTAACAGCACCCAGTACCA
 
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JMFF047B03+ TTAGGATTCCCTGCCCATTTGAATGATGGCTCCATGATTAACTCTTTCTCATCAGTAACA
                      ____________________________________________________________
consensus TTAGGATTCCCTGCCCATTTGAATGATGGCTCCATGATTAACTCTTTCTCATCAGTAACA
 
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JMFF047B03+ TAGACCTTCATACCTGNCAGAGTGNGAGGCAATGACCCCAGAGTCAGTGTTTCAAATTCG
                      ____________________________________________________________
consensus TAGACCTTCATACCTGNCAGAGTGNGAGGCAATGACCCCAGAGTCAGTGTTTCAAATTCG
 
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JMFF047B03+ ACAGAGTCAATCTTATACTTTGGAATTTGCTCTGCAATTATTGGTGTAGCAATGGTCTTT
                      ____________________________________________________________
consensus ACAGAGTCAATCTTATACTTTGGAATTTGCTCTGCAATTATTGGTGTAGCAATGGTCTTT
 
. : . : . : . : . : . :
JMSF005K01+ AAATAAGGCCACATGTACTCAAGGAACTTGTTGATC
JMFF047B03+ ACCATCCTGCAAATGGCCTTGTCCAAATAAGGCCACATGTACTCAAGGAACTTGTTGATC
                      ____________________________________________________________
consensus ACCATCCTGCAAATGGCCTTGTCCAAATAAGGCCACATGTACTCAAGGAACTTGTTGATC
 
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JMSF005K01+ CAGTCAACTCGATCATAGTCTGGATTTTTAACCCAAAGGGGGATTTCTGGAAGCAACTTT
JMFF047B03+ CAGTCAACTCGATCATAGTCTGGATTTTTAACCCAAAGGGGGATTTCTGGAAGCAACTTT
                      ____________________________________________________________
consensus CAGTCAACTCGATCATAGTCTGGATTTTTAACCCAAAGGGGGATTTCTGGAAGCAACTTT
 
. : . : . : . : . : . :
JMSF005K01+ TGCAAAGCTTTAGTGTCTTGCTCAACCAGCGGGCGAATAACAGGATCCTTAACATCGCTG
JMSF011D03+ CCTTAACATCGCTG
JMFF047B03+ TGCAAAGCTTTAGTGTCTTGCTCAACCAGCGGGCGAATAACAGGATCCTTAACATCGCTG
                      ____________________________________________________________
consensus TGCAAAGCTTTAGTGTCTTGCTCAACCAGCGGGCGAATAACAGGATCCTTAACATCGCTG
 
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JMSF005K01+ GGCTGGAAATAGATGAAGGAAAAGTACCCAATCACAAGCCCAGTCGTGACCCCAACTCCA
JMSF011D03+ GGCTGGAAATAGATGAAGGAAAAGTACCCAATCACAAGCCCAGTCGTGACCCCAACTCCA
JMFF047B03+ GGCTGGAAATAGATGAAGGAAAAGTACCCAATCACAAGCCCAGTCGTGACCCCAACTCCA
                      ____________________________________________________________
consensus GGCTGGAAATAGATGAAGGAAAAGTACCCAATCACAAGCCCAGTCGTGACCCCAACTCCA
 
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JMSF005K01+ AATCCACAAAAACCCATGATGGTGCTGAAGAAACCCATCTCTGAACCCTCGAGATTCACT
JMSF011D03+ AATCCACAAAAACCCATGATGGTGCTGAAGAAACCCATCTCTGAACCCTCGAGATTCACT
JMFF047B03+ AATCCACAAAAACCCATGATGGTGCTGAAGAAACCCATCTCTGAACCCTCGAGATTCACT
                      ____________________________________________________________
consensus AATCCACAAAAACCCATGATGGTGCTGAAGAAACCCATCTCTGAACCCTCGAGATTCACT
 
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JMSF005K01+ TCACAGCAACCTCAGCTAAACTCACTGGCTCAACTCGTCAAAAACTCAGATCAAACTCGA
JMSF011D03+ TCACAGCAACCTCAGCTAAACTCACTGGCTCAACTCGTCAAAAACTCAGATCAAACTCGA
JMFF047B03+ TCACAGCAACCTCAGCTAAACTCACTGGCTCAACTCGTCAAAAACTCAGATCAAACTCGA
                      ____________________________________________________________
consensus TCACAGCAACCTCAGCTAAACTCACTGGCTCAACTCGTCAAAAACTCAGATCAAACTCGA
 
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JMSF005K01+ CTAGAAGGTTCTACAGTCCACGTTCCCAGCCCTCCTCGACTCTTCCTCGTACCAGAATC
JMSF011D03+ CTAGAAGGTTCTACAGTCCACGTTCCCAGCCCTCCTCGACTCTTCCTCGTACCAGAATC
JMFF047B03+ CTAGAAGGTTCTACAGTCCACGTTCCCAGCCCTCCTCGACTCTTCCTCGTACCAGAATCA
                      ____________________________________________________________
consensus CTAGAAGGTTCTACAGTCCACGTTCCCAGCCCTCCTCGACTCTTCCTCGTACCAGAATCA