Previous Contig 001906:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044L16Sequence634001906 (2)gb:AE005172_8917452e-38Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC007508_153589565010458 (2)gb:AP001633_18213777e-27Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P051
JMFF050A13Sequence633001906 (2)gb:AE005172_8917453e-38Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC007508_153589608010458 (2)gb:AC130599_17407294e-29Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07, complet

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF050A13+ AAAAGTGCATGTCGATAATCGTTGCCTCCGAAA
JMFF044L16+ GAAAAGTGCATGTCGATAATCGTGCCCTCCGAAA
                      ____________________________________________________________
consensus GAAAAGTGCATGTCGATAATCGTTGCCTCCGAAA
 
. : . : . : . : . : . :
JMFF050A13+ GGACCCAGAATAAAAAGTGAACCCTCCAATAGATCACCACAATTTGAACGTGAAGTGCAC
JMFF044L16+ GGACCCAGAATAAAAAGTGAACCCTCCAATAGATCACCACAATTTGAACGTGAAGTGCAC
                      ____________________________________________________________
consensus GGACCCAGAATAAAAAGTGAACCCTCCAATAGATCACCACAATTTGAACGTGAAGTGCAC
 
. : . : . : . : . : . :
JMFF050A13+ AGAGATGGCAGCATGTCTTTGAACCAATTCAACTGAACTCTCATGGACACATTCGTATAA
JMFF044L16+ AGAGATGGCAGCATGTCTTTGAACCAATTCAACTGAACTCTCATGGACACATTCGTATAA
                      ____________________________________________________________
consensus AGAGATGGCAGCATGTCTTTGAACCAATTCAACTGAACTCTCATGGACACATTCGTATAA
 
. : . : . : . : . : . :
JMFF050A13+ ATATTGCGAATCCCTCTTTCTTCATAGAATGAACTGTCCAGCGCCGCGGCTCCTACGATG
JMFF044L16+ ATATTGCGAATCCCTCTTTCTTCATAGAATGAACTGTCCAGCGCCGCGGCTCCTACGATG
                      ____________________________________________________________
consensus ATATTGCGAATCCCTCTTTCTTCATAGAATGAACTGTCCAGCGCCGCGGCTCCTACGATG
 
. : . : . : . : . : . :
JMFF050A13+ GCGAAATTCACACCTCCCTTTGTATTAATGCCGCCCAAAAGTGTTCCACCCGCCGGTGGC
JMFF044L16+ GCGAAATTCACACCTCCCTTTGTATTAATGCCGCCCAAAAGTGTTCCACCCGCCGGTGGC
                      ____________________________________________________________
consensus GCGAAATTCACACCTCCCTTTGTATTAATGCCGCCCAAAAGTGTTCCACCCGCCGGTGGC
 
. : . : . : . : . : . :
JMFF050A13+ AGTAATGGAAGCCCAAAGTGCTCAGCTGCCAACAAGAGTCCGGCCTCCGCTCCGATGAAG
JMFF044L16+ AGTAATGGAAGCCCAAAGTGCTCAGCTGCCAACAAGAGTCCGGCCTCCGCTCCGATGAAG
                      ____________________________________________________________
consensus AGTAATGGAAGCCCAAAGTGCTCAGCTGCCAACAAGAGTCCGGCCTCCGCTCCGATGAAG
 
. : . : . : . : . : . :
JMFF050A13+ TCTATAATTAGGCGGCCGTCGGAGCATCGGCCGGTGGGGTGGCCGAAGAAGGTTTCCCCG
JMFF044L16+ TCTATAATTAGGCGGCCGTCGGAGCATCGGCCGGTGGGGTGGCCGAAGAAGGTTTCCCCG
                      ____________________________________________________________
consensus TCTATAATTAGGCGGCCGTCGGAGCATCGGCCGGTGGGGTGGCCGAAGAAGGTTTCCCCG
 
. : . : . : . : . : . :
JMFF050A13+ TAAGGCGGAAGTCCCATGTGCGGAATATCGTTCGAGGGAGAGAGGATAACGTGGTTTCCG
JMFF044L16+ TAAGGCGGAAGTCCCATGTGCGGAATATCGTTCGAGGGAGAGAGGATAACGTGGTTTCCG
                      ____________________________________________________________
consensus TAAGGCGGAAGTCCCATGTGCGGAATATCGTTCGAGGGAGAGAGGATAACGTGGTTTCCG
 
. : . : . : . : . : . :
JMFF050A13+ GTATCGGTGACGGAATCTCCGAAGCCAAAAATTGCCGTATAGCATCCAACCGCCGGTGTA
JMFF044L16+ GTATCGGTGACGGAATCTCCGAAGCCAAAAATTGCCGTATAGCATCCAACCGCCGGTGTA
                      ____________________________________________________________
consensus GTATCGGTGACGGAATCTCCGAAGCCAAAAATTGCCGTATAGCATCCAACCGCCGGTGTA
 
. : . : . : . : . : . :
JMFF050A13+ AGTAGAATGGAGAGAATGAAAAGGATATGCATCGCTTGTTCCATAGTCATGATATCAGCT
JMFF044L16+ AGTAGAATGGAGAGAATGAAAAGGATATGCATCGCTTGTTCCATAGTCATGATATCAGCT
                      ____________________________________________________________
consensus AGTAGAATGGAGAGAATGAAAAGGATATGCATCGCTTGTTCCATAGTCATGATATCAGCT
 
. : . : . : . : . : . :
JMFF050A13+ AAACTACAAGGAAACAATTACAAAAGAGAGACAGAGATACAGGAACTGATCATGAGTGGT
JMFF044L16+ AAACTACAAGGAAACAATTACAAAAGAGAGACAGAGATACAGGAACTGATCATGAGTGGT
                      ____________________________________________________________
consensus AAACTACAAGGAAACAATTACAAAAGAGAGACAGAGATACAGGAACTGATCATGAGTGGT