Previous Contig 001787:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041P09Sequence659001787 (5)gb:BT015052_16420222e-09Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops614010181 (5)gb:BT015052_16420222e-22Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops
JMFF048L15Sequence398001787 (5)338010181 (5)
JMSF001N05Sequence419001787 (5)gb:BT015052_16420221e-04Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops677010181 (5)pir|T01251|T012511e-26hypothetical protein At2g38190 [imported] - Arabidopsis thaliana>gb:AC003028_153
JMSF019E11Sequence506001787 (5)gb:BT015052_16420224e-07Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops774010181 (5)pir|T01251|T012512e-26hypothetical protein At2g38190 [imported] - Arabidopsis thaliana>gb:AC003028_153
JMSF035L16Sequence654001787 (5)gb:BT015052_16420228e-17Arabidopsis thaliana At5g01450 gene, complete cds.>gb:BT015858_1642476 Arabidops310010181 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF035L16+ AATAATATGTCCATTCCTTGTGAGTGTTTG
                      ____________________________________________________________
consensus AATAATATGTCCATTCCTTGTGAGTGTTTG
 
. : . : . : . : . : . :
JMSF035L16+ CTGGGAGAGAGGTTTTATAAGCTTCAGACCAAGTATCCACAATATCAAGGGGGGGATTTC
                      ____________________________________________________________
consensus CTGGGAGAGAGGTTTTATAAGCTTCAGACCAAGTATCCACAATATCAAGGGGGGGATTTC
 
. : . : . : . : . : . :
JMSF035L16+ TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
JMSF019E11+ TTGCATTATCTATCTCCTCCACCGTTATTT
JMSF001N05+ T
JMFF041P09+ TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
                      ____________________________________________________________
consensus TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
 
. : . : . : . : . : . :
JMSF035L16+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMSF019E11+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMSF001N05+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMFF041P09+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
                      ____________________________________________________________
consensus GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
 
. : . : . : . : . : . :
JMSF035L16+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
JMSF019E11+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAAAAGGTAGTAA
JMSF001N05+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
JMFF048L15+ CCAGAAGGTAGTAA
JMFF041P09+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
                      ____________________________________________________________
consensus TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
 
. : . : . : . : . : . :
JMSF035L16+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMSF019E11+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMSF001N05+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMFF048L15+ CAACGACAACACAAGACCAAGTGTCGTTTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMFF041P09+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
                      ____________________________________________________________
consensus CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
 
. : . : . : . : . : . :
JMSF035L16+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMSF019E11+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMSF001N05+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMFF048L15+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMFF041P09+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
                      ____________________________________________________________
consensus TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
 
. : . : . : . : . : . :
JMSF035L16+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMSF019E11+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMSF001N05+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMFF048L15+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMFF041P09+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
                      ____________________________________________________________
consensus GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
 
. : . : . : . : . : . :
JMSF035L16+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMSF019E11+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMSF001N05+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMFF048L15+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMFF041P09+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
                      ____________________________________________________________
consensus GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
 
. : . : . : . : . : . :
JMSF035L16+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
JMSF019E11+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
JMSF001N05+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGA
JMFF048L15+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTCTGTCTCATTTTTAGATTT
JMFF041P09+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
                      ____________________________________________________________
consensus ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
 
. : . : . : . : . : . :
JMSF035L16+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
JMSF019E11+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAG
JMFF048L15+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
JMFF041P09+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
                      ____________________________________________________________
consensus TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
 
. : . : . : . : . : . :
JMSF035L16+ AGGGGTTTAATTATTGTAACCT
JMFF048L15+ AGGGGTTTAATTATTGTAACCT
JMFF041P09+ AGGGGTTTAATTATTGTAACCTATAATCAAATGCACCTTCGCAGCTTGGATGATTTTATC
                      ____________________________________________________________
consensus AGGGGTTTAATTATTGTAACCTATAATCAAATGCACCTTCGCAGCTTGGATGATTTTATC
 
. : . : . : . : . : . :
JMFF041P09+ CGGGATGGTGATTTTTATTTATTTTTTATTTATTTTTGTAGGTTTCCTTCACGGATCTGT
                      ____________________________________________________________
consensus CGGGATGGTGATTTTTATTTATTTTTTATTTATTTTTGTAGGTTTCCTTCACGGATCTGT