| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019E20 | Sequence | 570 | 001759 (4) | gb:AP000604_1820422 | 2e-44 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. | 668 | 009218 (5) | gb:AP000604_1820422 | 2e-26 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. |
| JMFF021H18 | Sequence | 581 | 001759 (4) | gb:AP000604_1820422 | 3e-45 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. | 727 | 009218 (5) | gb:AP000604_1820422 | 9e-37 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. |
| JMFF027H18 | Sequence | 512 | 001759 (4) | gb:AP000604_1820422 | 2e-32 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. | 659 | 009218 (5) | gb:AP000604_1820422 | 4e-27 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. |
| JMFF041D06 | Sequence | 631 | 001759 (4) | gb:AP000604_1820422 | 2e-48 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. | 629 | 009218 (5) | gb:AP000604_1820422 | 9e-26 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6. |
This contig is upended
. : . : . : . : . : . :
JMFF041D06+ TCTGTTGAAGGGTCATGTGTGTTATTNTCTC
____________________________________________________________
consensus TCTGTTGAAGGGTCATGTGTGTTATTNTCTC
. : . : . : . : . : . :
JMFF019E20+ CCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
JMFF021H18+ CCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
JMFF041D06+ TCCATTGACAACATCCCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
____________________________________________________________
consensus TCCATTGACAACATCCCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
. : . : . : . : . : . :
JMFF019E20+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF027H18+ CAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF021H18+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF041D06+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
____________________________________________________________
consensus ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
. : . : . : . : . : . :
JMFF019E20+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF027H18+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF021H18+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF041D06+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
____________________________________________________________
consensus TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
. : . : . : . : . : . :
JMFF019E20+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF027H18+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF021H18+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF041D06+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
____________________________________________________________
consensus AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
. : . : . : . : . : . :
JMFF019E20+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF027H18+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF021H18+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF041D06+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
____________________________________________________________
consensus CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
. : . : . : . : . : . :
JMFF019E20+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF027H18+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF021H18+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF041D06+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
____________________________________________________________
consensus GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
. : . : . : . : . : . :
JMFF019E20+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF027H18+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF021H18+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF041D06+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
____________________________________________________________
consensus TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
. : . : . : . : . : . :
JMFF019E20+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF027H18+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF021H18+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF041D06+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
____________________________________________________________
consensus TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
. : . : . : . : . : . :
JMFF019E20+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF027H18+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF021H18+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF041D06+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
____________________________________________________________
consensus GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
. : . : . : . : . : . :
JMFF019E20+ GTTTGAATGGGAAAAAAGTGCAAAAGATTCTCAGGGGATTTTGGG
JMFF027H18+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGG
JMFF021H18+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAAT
JMFF041D06+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAATCGGTTCT
____________________________________________________________
consensus GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAATCGGTTCT