Previous Contig 001533:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017A21Sequence585001533 (5)gb:OSJN00138_16955213e-50Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequenc788009825 (5)gb:AF428364_17992945e-60Arabidopsis thaliana At2g43320/T1O24.6 mRNA, complete cds.
JMFF034I09Sequence551001533 (5)gb:OSJN00138_16955214e-29Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequenc744009825 (5)gb:AF428364_17992947e-49Arabidopsis thaliana At2g43320/T1O24.6 mRNA, complete cds.
JMSF021H16Sequence663001533 (5)gb:OSJN00138_16955212e-51Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequenc742009825 (5)gb:AF428364_17992944e-61Arabidopsis thaliana At2g43320/T1O24.6 mRNA, complete cds.
JMSF028E21Sequence554001533 (5)gb:OSJN00138_16955211e-32Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequenc715009825 (5)gb:AF428364_17992943e-52Arabidopsis thaliana At2g43320/T1O24.6 mRNA, complete cds.
JMSF042I17Sequence720001533 (5)gb:OSJN00138_16955211e-52Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequenc746009825 (5)gb:AF428364_17992941e-61Arabidopsis thaliana At2g43320/T1O24.6 mRNA, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042I17+ AA
                      ____________________________________________________________
consensus AA
 
. : . : . : . : . : . :
JMSF021H16+ TCTGCATTCCTGTCCTGAA
JMFF017A21+ CATTTGGAATAGTGGTGCATCTTATAGCCTCTGCATTCCTGTCCTGAA
JMSF042I17+ GGTTCACCAAGACATTTGGAATAGTGGTGCATCTTATAGCCTCTGCATTCCTGTCCTGAA
                      ____________________________________________________________
consensus GGTTCACCAAGACATTTGGAATAGTGGTGCATCTTATAGCCTCTGCATTCCTGTCCTGAA
 
. : . : . : . : . : . :
JMSF021H16+ AATGCACGGTAGAAGCTCCCTTTAAACAAGCAAATATTCCTGGAAGCCCATAGCCGCAGC
JMFF017A21+ AATGCACGGTAGAAGCTCCCTTTAAACAAGCAAATATTCCTGGAAGCCCATAGCCGCAGC
JMSF042I17+ AATGCACGGTAGAAGCTCCCTTTAAACAAGCAAATATTCCTGGAAGCCCATAGCCGCAGC
                      ____________________________________________________________
consensus AATGCACGGTAGAAGCTCCCTTTAAACAAGCAAATATTCCTGGAAGCCCATAGCCGCAGC
 
. : . : . : . : . : . :
JMSF028E21+ TCAGCTGTCCATCCCTAATCTCATGTTTG
JMSF021H16+ TAAGCTC-AATCACCCTTTTGCCCCTAAAACTCAGCTGTCCATCCCTAATCTCATGTTTG
JMFF017A21+ TAAGCTC-AATCACCCTTTTGCCCCTAAAACTCAGCTGTCCATCCCTAATCTCATGTTTG
JMSF042I17+ TAAGCTCAAATCACCCTTTTGCCCCTAAAACTCAGCTGTCCATCCCTAATCTCATGTTTG
JMFF034I09+ TCTCATGTTTG
                      ____________________________________________________________
consensus TAAGCTC-AATCACCCTTTTGCCCCTAAAACTCAGCTGTCCATCCCTAATCTCATGTTTG
 
. : . : . : . : . : . :
JMSF028E21+ AGAACATTAACAAGATCAAGTGAACCATCCCAACACTTCAGATATCCATCTGGTTTTGAG
JMSF021H16+ AGAACATTAACAAGATCAAGTGAACCATCCCAACACTTCAGATATCCATCTGGTTTTGAG
JMFF017A21+ AGAACATTAACAAGATCAAGTGAACCATCCCAACACTTCAGATATCCATCTGGTTTTGAG
JMSF042I17+ AGAACATTAACAAGATCAAGTGAACCATCCCAACACTTCAGATATCCATCTGGTTTTGAG
JMFF034I09+ AGAACATTAACAAGATCAAGTGAACCATCCCAACACTTCAGATATCCATCTGGTTTTGAG
                      ____________________________________________________________
consensus AGAACATTAACAAGATCAAGTGAACCATCCCAACACTTCAGATATCCATCTGGTTTTGAG
 
. : . : . : . : . : . :
JMSF028E21+ GATATCATTTCTGTGCCAGTAAAGCCGATTATATCAGCAACACTTATTCTACCCTTGACT
JMSF021H16+ GATATCATTTCTGTGCCAGTAAAGCCGATTATATCAGCAACACTTATTCTACCCTTGACT
JMFF017A21+ GATATCATTTCTGTGCCAGTAAAGCCGATTATATCAGCAACACTTATTCTACCCTTGACT
JMSF042I17+ GATATCATTTCTGTGCCAGTAAAGCCGATTATATCAGCAACACTTATTCTACCCTTGACT
JMFF034I09+ GATATCATTTCTGTGCCAGTAAAGCCGATTATATCAGCAACACTTATTCTACCCTTGACT
                      ____________________________________________________________
consensus GATATCATTTCTGTGCCAGTAAAGCCGATTATATCAGCAACACTTATTCTACCCTTGACT
 
. : . : . : . : . : . :
JMSF028E21+ ATATTGATTCCTTGTAGATCTACATTCTCACTAGCATATGTATAGGGATGCGCGGTTTTT
JMSF021H16+ ATATTGATTCCTTGTAGATCTACATTCTCACTAGCATATGTATAGGGATGCGCGGTTTTT
JMFF017A21+ ATATTGATTCCTTGTAGA--TACATTCTCACTAGCATATGTATAGGGATGCGCGGTTTTT
JMSF042I17+ ATATTGATTCCTTGTAGATCTACATTCTCACTAGCATATGTATAGGGATGCGCGGTTTTT
JMFF034I09+ ATATTGATTCCTTGTAGATCTACATTCTCACTAGCATATGTATAGGGATGCGCGGTTTTT
                      ____________________________________________________________
consensus ATATTGATTCCTTGTAGATCTACATTCTCACTAGCATATGTATAGGGATGCGCGGTTTTT
 
. : . : . : . : . : . :
JMSF028E21+ GAAGGAACAATCTCTACAGCTGGTGAAGGAAGATGACCATCTCTGTCAGATATTACTGAC
JMSF021H16+ GAAGGAACAATCTCTACAGCTGGTGAAGGAAGATGACCATCTCTGTCAGATATTACTGAC
JMFF017A21+ GAAGGAACAATCTCTACAGCTGGTGAAGGAAGATGACCATCTCTGTCAGATATTACTGAC
JMSF042I17+ GAAGGAACAATCTCTACAGCTGGTGAAGGAAGATGACCATCTCTGTCAGATATTACTGAC
JMFF034I09+ GAAGGAACAATCTCTACAGCTGGTGAAGGAAGATGACCATCTCTGTCAGATATTACTGAC
                      ____________________________________________________________
consensus GAAGGAACAATCTCTACAGCTGGTGAAGGAAGATGACCATCTCTGTCAGATATTACTGAC
 
. : . : . : . : . : . :
JMSF028E21+ GCGTGACACCCCCTGTCTGCAGATATCAATCCAGGCAAGCATTGTGCAAGAAGAGATGGT
JMSF021H16+ GCGTGACACCCCCTGTCTGCAGATATCAATCCAGGCAAGCATTGTGCAAGAAGAGATGGT
JMFF017A21+ GCGTGACACCCCCTGTCTGCAGATATCAATCCAGGCAAGCATTGTGCAAGAAGAGATGGT
JMSF042I17+ GCGTGACACCCCCTGTCTGCAGATATCAATCCAGGCAAGCATTGTGCAAGAAGAGATGGT
JMFF034I09+ GCGTGACACCCCCTGTCTGCAGATATCAATCCAGGCAAGCATTGTGCAAGAAGAGATGGT
                      ____________________________________________________________
consensus GCGTGACACCCCCTGTCTGCAGATATCAATCCAGGCAAGCATTGTGCAAGAAGAGATGGT
 
. : . : . : . : . : . :
JMSF028E21+ GCACGCATTATTACTGGCACTAAGATAACTTGCGATCCCAGAAAGAATGGTGCACAGTAA
JMSF021H16+ GCACGCATTATTACTGGCACTAAGATAACTTGCGATCCCAGAAAGAATGGTGCACAGTAA
JMFF017A21+ GCACGCATTATTACTGGCACTAAGATAACTTGCGATCCCAGAAAGAATGGTGCACAGTAA
JMSF042I17+ GCACGCATTATTACTGGCACTAAGATAACTTGCGATCCCAGAAAGAATGGTGCACAGTAA
JMFF034I09+ GCACGCATTATTACTGGCACTAAGATAACTTGCGATCCCAGAAAGAATGGTGCACAGTAA
                      ____________________________________________________________
consensus GCACGCATTATTACTGGCACTAAGATAACTTGCGATCCCAGAAAGAATGGTGCACAGTAA
 
. : . : . : . : . : . :
JMSF028E21+ TCGAATGGCGAAGAAGAAGAATGAGAGAAAGTTGAGAACGCAAAATCTGAATTTGAGCAG
JMSF021H16+ TCGAATGGCGAAGAAGAAGAATGAGAGAAAGTTGAGAACGCAAAATCTGAATTTGAGCAG
JMFF017A21+ TCGAATGGCGAAGAAGAAGAATGAGAGAAAGTTGAGAACGCAAAATCTGAATTTGAGCAG
JMSF042I17+ TCGAATGGCGAAGAAGAAGAATGAGAGAAAGTTGAGAACGCAAAATCTGAATTTGAGCAG
JMFF034I09+ TCGAATGGCGAAGAAGAAGAATGAGAGAAAGTTGAGAACGCAAAATCTGAATTTGAGCAG
                      ____________________________________________________________
consensus TCGAATGGCGAAGAAGAAGAATGAGAGAAAGTTGAGAACGCAAAATCTGAATTTGAGCAG
 
. : . : . : . : . : . :
JMSF028E21+ GGTTTGATGGGAGAGGTTTAATGTGAATTGAAGAAGAAAGGGTGAGAGAGCAATTTCAGG
JMSF021H16+ GGTTTGATGGGAGAGGTTTAATGTGAATTGAAGAAGAAAGGGTGAGAGAGCAATTTCAGG
JMSF042I17+ GGTTTGATGGGAGAGGTTTAATGTGAATTGAAGAAGAAAGGGTGAGAGAGCAATTTCAGG
JMFF034I09+ GGTTTGATGGGAGAGGTTTAATGTGAATTGAAGAAGAAAGGGTGAGAGAGCAATTTCAGG
                      ____________________________________________________________
consensus GGTTTGATGGGAGAGGTTTAATGTGAATTGAAGAAGAAAGGGTGAGAGAGCAATTTCAGG
 
. : . : . : . : . : . :
JMSF028E21+ GAAAATGGGTTTTTACTAAAAATACGATTCACGATGACCCAGTC
JMSF021H16+ GAAAATGGGTTTTTACTAAAAATACGATTCACGATGACCCAGTC
JMSF042I17+ GAAAATGGGTTTTTACTAAAAATACGATTCACGATGACCCAGTCGAGTCGTAGCGTC
JMFF034I09+ GAAAATGGGTTTTTACTAAAAATACGATTCACGATGACCCAGTCGAGTCGTAGCGTCAGC
                      ____________________________________________________________
consensus GAAAATGGGTTTTTACTAAAAATACGATTCACGATGACCCAGTCGAGTCGTAGCGTCAGC