Previous Contig 001488:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004O14Sequence467001488 (2)gb:AY062453_15651094e-43Arabidopsis thaliana nitrate transporter (NTL1) (At1g69850; T17F3.12) mRNA, comp690008353 (2)gb:AB009053_15106845e-39Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
JMFF033D09Sequence535001488 (2)gb:AY062453_15651093e-43Arabidopsis thaliana nitrate transporter (NTL1) (At1g69850; T17F3.12) mRNA, comp746008353 (2)gb:BT000720_16349934e-50Arabidopsis thaliana clone RAFL09-73-M24 (R19648) putative nitrate transporter (

Alignment

This contig is upended


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JMFF004O14+ TCCTCCAACACCAAGTGCCACCAGATAGAGGCCAGCAAATAACATTGCTGACT
JMFF033D09+ ATTCCTCCAACACCAAGTGCCACCAGATAGAGGCCAGCAAATAACATTGCTGACT
                      ____________________________________________________________
consensus ATTCCTCCAACACCAAGTGCCACCAGATAGAGGCCAGCAAATAACATTGCTGACT
 
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JMFF004O14+ TCCAACCTTTGACTTCATGACAAGGGGCGTTTCTGTTAGGTGATGAACAAACTGATGGTT
JMFF033D09+ TCCAACCTTTGACTTCATGACAAGGGGCGTTTCTGTTAGGTGATGAACAAACTGATGGTT
                      ____________________________________________________________
consensus TCCAACCTTTGACTTCATGACAAGGGGCGTTTCTGTTAGGTGATGAACAAACTGATGGTT
 
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JMFF004O14+ TCAGAGAAGGTATCTGTGCTTGAACTGTGAGCATCAACAGACCCAAAAATTCAATTGTTG
JMFF033D09+ TCAGAGAAGGTATCTGTGCTTGAACTGTGAGCATCAACAGACCCAAAAATTCAATTGTTG
                      ____________________________________________________________
consensus TCAGAGAAGGTATCTGTGCTTGAACTGTGAGCATCAACAGACCCAAAAATTCAATTGTTG
 
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JMFF004O14+ CACTTATTAGAAAGATGGAGTAGGTGGTGAAGAGGGCATCAGACAAAAACCCACCAAGGA
JMFF033D09+ CACTTATTAGAAAGATGGAGTAGGTGGTGAAGAGGGCATCAGACAAAAACCCACCAAGGA
                      ____________________________________________________________
consensus CACTTATTAGAAAGATGGAGTAGGTGGTGAAGAGGGCATCAGACAAAAACCCACCAAGGA
 
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JMFF004O14+ GAGCAAGGAAGAACGATGTGCCCATAAAGTTAGTGACAATGTTGGCTGAAGTAGATGGAG
JMFF033D09+ GAGCAAGGAAGAACGATGTGCCCATAAAGTTAGTGACAATGTTGGCTGAAGTAGATGGAG
                      ____________________________________________________________
consensus GAGCAAGGAAGAACGATGTGCCCATAAAGTTAGTGACAATGTTGGCTGAAGTAGATGGAG
 
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JMFF004O14+ AGAAATGCATGAATTTTGAGAGGTAAAGCACGAGGTTGCTTGCATTCGCCAGGTATGCTA
JMFF033D09+ AGAAATGCATGAATTTTGAGAGGTAAAGCACGAGGTTGCTTGCATTCGCCAGGTATGCTA
                      ____________________________________________________________
consensus AGAAATGCATGAATTTTGAGAGGTAAAGCACGAGGTTGCTTGCATTCGCCAGGTATGCTA
 
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JMFF004O14+ GGTTCTCCACTATCTCTACAACCAAGACAAAAGATACAGCAAGAACACCACCATGGCGGC
JMFF033D09+ GGTTCTCCACTATCTCTACAACCAAGACAAAAGATACAGCAAGAACACCACCATGGCGGC
                      ____________________________________________________________
consensus GGTTCTCCACTATCTCTACAACCAAGACAAAAGATACAGCAAGAACACCACCATGGCGGC
 
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JMFF004O14+ CCTTCAAGGCTGGTCTATTTCTCCAGTCTACATACCCTTCCCATTCTTGTAAAT
JMFF033D09+ CCTTCAAGGCTGGTCTATTTCTCCAGTCTACATACCCTTCCCATTCTTGTAAATAGGGTC
                      ____________________________________________________________
consensus CCTTCAAGGCTGGTCTATTTCTCCAGTCTACATACCCTTCCCATTCTTGTAAATAGGGTC
 
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JMFF033D09+ CCGTGTCCATTTCTTAAGAGATTTCTGGATATCCAAACCTTGATCGAAAGTTTTCACGTT
                      ____________________________________________________________
consensus CCGTGTCCATTTCTTAAGAGATTTCTGGATATCCAAACCTTGATCGAAAGTTTTCACGTT