Previous Contig 001481:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF042L23+                                           CGTAAACCAGTGACCCCAACCCAAGTGA
                      ____________________________________________________________
consensus                                             CGTAAACCAGTGACCCCAACCCAAGTGA
 
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JMSF042L23+           GAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTTG
                      ____________________________________________________________
consensus             GAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTTG
 
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JMSF042L23+           TGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTCC
                      ____________________________________________________________
consensus             TGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTCC
 
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JMSF042L23+           TTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCAT
                      ____________________________________________________________
consensus             TTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCAT
 
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JMSF042L23+           TCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTCA
rJMSF007D01+          TCCCCATCAGATTCTTTCTCAGTGGATTTATC-TGAACAGTAGGGAAATTCCCATCTTCA
                      ____________________________________________________________
consensus             TCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTCA
 
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JMSF042L23+           TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
rJMSF007D01+          TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
                      ____________________________________________________________
consensus             TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
 
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JMSF042L23+           CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
JMFF019N21+                                 CCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
rJMSF007D01+          CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
                      ____________________________________________________________
consensus             CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
 
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JMSF042L23+           ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
JMFF019N21+           ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
rJMSF007D01+          ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
                      ____________________________________________________________
consensus             ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
 
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JMSF042L23+           TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAGCCCATCTTC
JMFF019N21+           TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
rJMSF007D01+          TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
                      ____________________________________________________________
consensus             TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
 
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JMSF042L23+           TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
JMFF019N21+           TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
rJMSF007D01+          TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
JMFF033B16+            TGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
                      ____________________________________________________________
consensus             TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
 
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JMSF042L23+           GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
JMFF019N21+           GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
rJMSF007D01+          GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
JMFF033B16+           GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
                      ____________________________________________________________
consensus             GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
 
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JMSF042L23+           TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
JMFF019N21+           TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
rJMSF007D01+          TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
JMFF033B16+           TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
                      ____________________________________________________________
consensus             TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
 
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JMSF042L23+           TCTTGCCTCACAGGAACACCAATCTGGTAAAAATC                         
JMFF019N21+           TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
rJMSF007D01+          TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
JMFF033B16+           TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
                      ____________________________________________________________
consensus             TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
 
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JMFF019N21+           GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
rJMSF007D01+          GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
JMFF033B16+           GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
                      ____________________________________________________________
consensus             GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
 
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JMFF019N21+           TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
rJMSF007D01+          TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
JMFF033B16+           TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
                      ____________________________________________________________
consensus             TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
 
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JMFF019N21+           CTGTTCTTGCAGGGAGGAGTAAAGAT                                  
rJMSF007D01+          CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
JMFF033B16+           CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
                      ____________________________________________________________
consensus             CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
 
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rJMSF007D01+          GCTTAGAAATGTTTCGAGAAATGC                                    
JMFF033B16+           GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT
                      ____________________________________________________________
consensus             GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT