clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF019N21 | Sequence | 543 | 001481 (4) | 723 | 013437 (3) | gb:AP002953_1823972 | 4e-65 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042 | |||
JMFF033B16 | Sequence | 478 | 001481 (4) | 713 | 021400 | gb:AP002953_1823972 | 9e-35 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042 | |||
JMSF007D01 | Sequence | 742 | 001481 (4) | gb:BT008322_1639539 | 4e-08 | Arabidopsis thaliana At1g56720 gene, complete cds. | |||||
JMSF042L23 | Sequence | 724 | 001481 (4) | gb:AP002953_1823972 | 5e-26 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042 | 701 | 013437 (3) | gb:AP002953_1823972 | 2e-51 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042 |
This contig is upended
. : . : . : . : . : . :
JMSF042L23+ CGTAAACCAGTGACCCCAACCCAAGTGA
____________________________________________________________
consensus CGTAAACCAGTGACCCCAACCCAAGTGA
. : . : . : . : . : . :
JMSF042L23+ GAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTTG
____________________________________________________________
consensus GAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTTG
. : . : . : . : . : . :
JMSF042L23+ TGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTCC
____________________________________________________________
consensus TGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTCC
. : . : . : . : . : . :
JMSF042L23+ TTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCAT
____________________________________________________________
consensus TTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCAT
. : . : . : . : . : . :
JMSF042L23+ TCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTCA
rJMSF007D01+ TCCCCATCAGATTCTTTCTCAGTGGATTTATC-TGAACAGTAGGGAAATTCCCATCTTCA
____________________________________________________________
consensus TCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTCA
. : . : . : . : . : . :
JMSF042L23+ TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
rJMSF007D01+ TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
____________________________________________________________
consensus TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
. : . : . : . : . : . :
JMSF042L23+ CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
JMFF019N21+ CCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
rJMSF007D01+ CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
____________________________________________________________
consensus CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
. : . : . : . : . : . :
JMSF042L23+ ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
JMFF019N21+ ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
rJMSF007D01+ ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
____________________________________________________________
consensus ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
. : . : . : . : . : . :
JMSF042L23+ TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAGCCCATCTTC
JMFF019N21+ TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
rJMSF007D01+ TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
____________________________________________________________
consensus TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
. : . : . : . : . : . :
JMSF042L23+ TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
JMFF019N21+ TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
rJMSF007D01+ TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
JMFF033B16+ TGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
____________________________________________________________
consensus TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
. : . : . : . : . : . :
JMSF042L23+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
JMFF019N21+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
rJMSF007D01+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
JMFF033B16+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
____________________________________________________________
consensus GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
. : . : . : . : . : . :
JMSF042L23+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
JMFF019N21+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
rJMSF007D01+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
JMFF033B16+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
____________________________________________________________
consensus TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
. : . : . : . : . : . :
JMSF042L23+ TCTTGCCTCACAGGAACACCAATCTGGTAAAAATC
JMFF019N21+ TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
rJMSF007D01+ TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
JMFF033B16+ TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
____________________________________________________________
consensus TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
. : . : . : . : . : . :
JMFF019N21+ GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
rJMSF007D01+ GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
JMFF033B16+ GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
____________________________________________________________
consensus GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
. : . : . : . : . : . :
JMFF019N21+ TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
rJMSF007D01+ TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
JMFF033B16+ TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
____________________________________________________________
consensus TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
. : . : . : . : . : . :
JMFF019N21+ CTGTTCTTGCAGGGAGGAGTAAAGAT
rJMSF007D01+ CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
JMFF033B16+ CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
____________________________________________________________
consensus CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
. : . : . : . : . : . :
rJMSF007D01+ GCTTAGAAATGTTTCGAGAAATGC
JMFF033B16+ GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT
____________________________________________________________
consensus GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT