Previous Contig 001481:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019N21Sequence543001481 (4)723013437 (3)gb:AP002953_18239724e-65Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042
JMFF033B16Sequence478001481 (4)713021400gb:AP002953_18239729e-35Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042
JMSF007D01Sequence742001481 (4)gb:BT008322_16395394e-08Arabidopsis thaliana At1g56720 gene, complete cds.
JMSF042L23Sequence724001481 (4)gb:AP002953_18239725e-26Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042701013437 (3)gb:AP002953_18239722e-51Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P042

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042L23+ CGTAAACCAGTGACCCCAACCCAAGTGA
                      ____________________________________________________________
consensus CGTAAACCAGTGACCCCAACCCAAGTGA
 
. : . : . : . : . : . :
JMSF042L23+ GAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTTG
                      ____________________________________________________________
consensus GAAACCTCGGGCAGGCCGGTTAGAGGAGATGGAGCAGCTATCGGATGCGAGGAGTATTTG
 
. : . : . : . : . : . :
JMSF042L23+ TGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTCC
                      ____________________________________________________________
consensus TGATGAACCGCAAATTTGGCTGAATTCCTTTCTTCTCGTGAATGTGACCCGTGATACTCC
 
. : . : . : . : . : . :
JMSF042L23+ TTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCAT
                      ____________________________________________________________
consensus TTGTCAACAAGATGAAACGAATCCGATTGACCGTTATTATCGCCATTCTTTGTTTTCCAT
 
. : . : . : . : . : . :
JMSF042L23+ TCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTCA
rJMSF007D01+ TCCCCATCAGATTCTTTCTCAGTGGATTTATC-TGAACAGTAGGGAAATTCCCATCTTCA
                      ____________________________________________________________
consensus TCCCCATCAGATTCTTTCTCAGTGGATTTATCTTGAACAGTAGGGAAATTCCCATCTTCA
 
. : . : . : . : . : . :
JMSF042L23+ TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
rJMSF007D01+ TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
                      ____________________________________________________________
consensus TTTTTCGACACTTGATCCACCTGAACCTCCTTAATTTCCTTTGAAACTTTCGGAATTTGA
 
. : . : . : . : . : . :
JMSF042L23+ CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
JMFF019N21+ CCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
rJMSF007D01+ CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
                      ____________________________________________________________
consensus CAAAGGGGGAGGCTTTCTTTCGCCCGCATTGATTTCTTCCGCAACGTGAGATAAAAAGTT
 
. : . : . : . : . : . :
JMSF042L23+ ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
JMFF019N21+ ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
rJMSF007D01+ ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
                      ____________________________________________________________
consensus ACTGATAAGAGGATGAATACTATCAAAAAGACAACAATAATCCCAATCAGCTCCCACACC
 
. : . : . : . : . : . :
JMSF042L23+ TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAGCCCATCTTC
JMFF019N21+ TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
rJMSF007D01+ TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
                      ____________________________________________________________
consensus TTGAGCCCAAAAACAGCAGTTTCTTTGGACATACCCTCATTCAGATTAGAACCCATCTTC
 
. : . : . : . : . : . :
JMSF042L23+ TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
JMFF019N21+ TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
rJMSF007D01+ TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
JMFF033B16+ TGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
                      ____________________________________________________________
consensus TTGGATGTCAAAAGACCTTCCAGAAAGACTCAATCTGCAATCTTTAAACCTCAGATCTCT
 
. : . : . : . : . : . :
JMSF042L23+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
JMFF019N21+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
rJMSF007D01+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
JMFF033B16+ GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
                      ____________________________________________________________
consensus GAAACTCCACCACCATATCCCTTGCTCAGACAATGAAAGGAAGCCCAATTCAATCACAGA
 
. : . : . : . : . : . :
JMSF042L23+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
JMFF019N21+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
rJMSF007D01+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
JMFF033B16+ TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
                      ____________________________________________________________
consensus TCTCAAACCAAGCAAGCCTAACAAAACCCAATGTCCAAAACACCCAAATAAATGAAATAA
 
. : . : . : . : . : . :
JMSF042L23+ TCTTGCCTCACAGGAACACCAATCTGGTAAAAATC
JMFF019N21+ TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
rJMSF007D01+ TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
JMFF033B16+ TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
                      ____________________________________________________________
consensus TCTTGCCTCACAGGAACACCAA-CTGGTAAAAATCAAGTCTTGATCAAATTCCCAAAGTG
 
. : . : . : . : . : . :
JMFF019N21+ GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
rJMSF007D01+ GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
JMFF033B16+ GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
                      ____________________________________________________________
consensus GGTTTTTACAGCATTGATCGATTTGACACAAAGCCTGAGCAGAGGTGCATAAAAAGTGGT
 
. : . : . : . : . : . :
JMFF019N21+ TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
rJMSF007D01+ TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
JMFF033B16+ TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
                      ____________________________________________________________
consensus TCTGACACCACCACCACCTTCTTCACCTTAATGACAGCTGACCCAACAACAAAGGGGCTG
 
. : . : . : . : . : . :
JMFF019N21+ CTGTTCTTGCAGGGAGGAGTAAAGAT
rJMSF007D01+ CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
JMFF033B16+ CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
                      ____________________________________________________________
consensus CTGTTCTTGCAGGGAGGAGTAAAGATGCATAAAATTGCAAAATGCTAATGATATCAACTG
 
. : . : . : . : . : . :
rJMSF007D01+ GCTTAGAAATGTTTCGAGAAATGC
JMFF033B16+ GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT
                      ____________________________________________________________
consensus GCTTAGAAATGTTTCGAGAAATGCTACTAGAAGGTAAGGAAGGGTGGAGTTATCAGTGGT