| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001L13 | Sequence | 536 | 001412 (14) | gb:AY498745_1178471 | 5e-84 | Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds. | 664 | 001412 (14) | sp|Q9LRX8|R1AB_ARATH | 4e-89 | 60S ribosomal protein L13a-2.>gb:AB028609_1517921 Arabidopsis thaliana genomic D |
| JMFF031B18 | Sequence | 553 | 001412 (14) | gb:AY498745_1178471 | 2e-86 | Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds. | 688 | 001412 (14) | sp|Q9LRX8|R1AB_ARATH | 3e-99 | 60S ribosomal protein L13a-2.>gb:AB028609_1517921 Arabidopsis thaliana genomic D |
| JMFF034H09 | Sequence | 533 | 001412 (14) | gb:AY498745_1178471 | 2e-84 | Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds. | 626 | 001412 (14) | sp|Q9LRX8|R1AB_ARATH | 1e-76 | 60S ribosomal protein L13a-2.>gb:AB028609_1517921 Arabidopsis thaliana genomic D |
| JMFN005I11 | Sequence | 593 | 001412 (14) | gb:AY498745_1178471 | 2e-95 | Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds. | |||||
| JMSF005E17 | Sequence | 427 | 004694 (5) | gb:AP002057_1821731 | 7e-21 | Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T19N8. | 152 | 001412 (14) | |||
| JMSF005G19 | Sequence | 201 | 001412 (14) | ||||||||
| JMSF016B15 | Sequence | 340 | 001412 (14) | gb:AY846823_1630724 | 5e-46 | Triticum aestivum ribosomal protein L13a mRNA, complete cds. | 792 | 001412 (14) | sp|Q9LRX8|R1AB_ARATH | e-104 | 60S ribosomal protein L13a-2.>gb:AB028609_1517921 Arabidopsis thaliana genomic D |
| JMSF038G08 | Sequence | 624 | 001412 (14) | gb:AY498745_1178471 | 2e-97 | Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds. | 779 | 001412 (14) | sp|Q9LRX8|R1AB_ARATH | e-104 | 60S ribosomal protein L13a-2.>gb:AB028609_1517921 Arabidopsis thaliana genomic D |
| JMSF046H18 | Sequence | 228 | 001412 (14) | gb:AY846823_1630724 | 9e-21 | Triticum aestivum ribosomal protein L13a mRNA, complete cds. | |||||
This contig is upended
. : . : . : . : . : . :
JMSF005G19+ TT
____________________________________________________________
consensus TT
. : . : . : . : . : . :
rJMSF005E17- TGTACCACA
JMSF005G19+ TTTTTTTTAACAGCTTCAAGCAAATAATTTGTCACAT-GTAACACAAAAATTGTACCACA
rJMFF001L13- ATTTGTCACAT-GTAACACAAAAATTGTACCACA
rJMSF016B15- ATTTGTCACATGGTAACACAAAAATTGTACCACA
rJMSF038G08- CACA
____________________________________________________________
consensus TTTTTTTTAACAGCTTCAAGCAAATAATTTGTCACAT-GTAACACAAAAATTGTACCACA
. : . : . : . : . : . :
rJMSF005E17- GGCCACAAGAAAAATGTTCCACNTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
JMSF005G19+ -GCCACAAG-AAAATGTTCCAC-TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMFF031B18- GCCACAAG-AAAATGTTCCAC-TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMFF001L13- -GCCACAAG-AAAATGTTCCAC-TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMSF016B15- -GCCACAAG-AAAATGTTCCAC-TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMSF038G08- -GCCACAAG-AAAATGTTCCAC-TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
____________________________________________________________
consensus -GCCACAAG-AAAATGTTCCAC-TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
. : . : . : . : . : . :
rJMSF005E17- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
JMSF005G19+ TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMFF031B18- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMFF034H09- GATG
rJMFF001L13- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMSF016B15- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMSF038G08- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
____________________________________________________________
consensus TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
. : . : . : . : . : . :
rJMSF005E17- TCAAGTTGGGTACCCAGTCTC
JMSF005G19+ TCAAGTTGGGTACCCAGTCTC
rJMFF031B18- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
rJMFF034H09- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
rJMFF001L13- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
rJMSF016B15- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
JMFN005I11+ AAGCTTTGTC
rJMSF038G08- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
JMSF038G08+ TCTCAGCTTTGACCNTAAGCTTTGTC
____________________________________________________________
consensus TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
. : . : . : . : . : . :
rJMFF031B18- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMFF034H09- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMFF001L13- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMSF016B15- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
JMFN005I11+ AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMSF038G08- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
JMSF038G08+ AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
JMFF031B18+ ATTCTCTAGAACC
____________________________________________________________
consensus AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
. : . : . : . : . : . :
rJMFF031B18- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMFF034H09- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMFF001L13- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMSF016B15- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFN005I11+ TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMSF038G08- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMSF038G08+ TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFF001L13+ GATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFF034H09+ GGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFF031B18+ TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
____________________________________________________________
consensus TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
. : . : . : . : . : . :
rJMFF031B18- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMFF034H09- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMFF001L13- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMSF016B15- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFN005I11+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMSF038G08- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMSF038G08+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFF001L13+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFF034H09+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFF031B18+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
____________________________________________________________
consensus TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
. : . : . : . : . : . :
rJMFF031B18- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMFF034H09- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMFF001L13- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMSF016B15- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFN005I11+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMSF038G08- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMSF038G08+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFF001L13+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFF034H09+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFF031B18+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
____________________________________________________________
consensus TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
. : . : . : . : . : . :
rJMFF031B18- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMFF034H09- CTCTTCGTCTTATGCGGAACCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMFF001L13- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMSF016B15- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFN005I11+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMSF038G08- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMSF038G08+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFF001L13+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFF034H09+ CTCTTCGTCTTATGCGGAACCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMSF016B15+ GCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFF031B18+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
____________________________________________________________
consensus CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
. : . : . : . : . : . :
rJMFF031B18- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMFF034H09- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMFF001L13- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMSF016B15- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFN005I11+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMSF038G08- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMSF038G08+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFF001L13+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFF034H09+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMSF016B15+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFF031B18+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
____________________________________________________________
consensus CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
. : . : . : . : . : . :
rJMFF031B18- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
rJMFF034H09- TACTTCATTTTCTGACGGACAAGG
rJMFF001L13- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
rJMSF016B15- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFN005I11+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
rJMSF038G08- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMSF038G08+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFF001L13+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFF034H09+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMSF016B15+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMSF046H18+ TGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFF031B18+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
____________________________________________________________
consensus TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
. : . : . : . : . : . :
rJMFF031B18- ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
rJMFF001L13- ACCACTCGCTGACCATTGAGCAGCTCCTTG
rJMSF016B15- ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMFN005I11+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
rJMSF038G08- ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMSF038G08+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMFF001L13+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMFF034H09+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMSF016B15+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMSF046H18+ ACCACTCGCTGACCATTGAGCAGCTCNTTGGCCAAGANGGAGGCCAGCCGTCCCAACATA
JMFF031B18+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
____________________________________________________________
consensus ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
. : . : . : . : . : . :
rJMFF031B18- TGATGCCTCGCGTCCACCACCACTCTACGAG
rJMSF016B15- TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMFN005I11+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
rJMSF038G08- TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMSF038G08+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMFF001L13+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCGAGATCCCGACACCATTTTT
JMFF034H09+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMSF016B15+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMSF046H18+ TGATGCCTNGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTAT
JMFF031B18+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
____________________________________________________________
consensus TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
. : . : . : . : . : . :
rJMSF016B15- GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGA
JMFN005I11+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAG
rJMSF038G08- GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMSF038G08+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMFF001L13+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMFF034H09+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMSF016B15+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTC
JMSF046H18+ GCTGCGTCTTCTCTTCACTCCCTTCNTATCCGGNGATGACTAGCTTAGCTCTGCTC
JMFF031B18+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCTAGC
____________________________________________________________
consensus GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCTAGC