| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028M01 | Sequence | 505 | 001328 (10) | gb:BT003850_1636978 | 1e-39 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | 553 | 001328 (10) | gb:BT003850_1636978 | 4e-48 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A |
| JMFF032D15 | Sequence | 560 | 001328 (10) | gb:BT003850_1636978 | 3e-46 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | 671 | 001328 (10) | gb:BT003850_1636978 | 9e-54 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A |
| JMFF044O21 | Sequence | 635 | 014990 | gb:AY225438_1590896 | 5e-05 | Capsicum annuum dehydrin-like protein (Dhn) mRNA, complete cds. | 589 | 001328 (10) | gb:BT003850_1636978 | 1e-41 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A |
| JMFN005K05 | Sequence | 627 | 001328 (10) | gb:BT003850_1636978 | 3e-56 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | |||||
| JMFN006J14 | Sequence | 625 | 001328 (10) | gb:BT003850_1636978 | 3e-58 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | |||||
| JMFN013D09 | Sequence | 618 | 001328 (10) | gb:BT003850_1636978 | 6e-51 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | |||||
| JMFN029F19 | Sequence | 648 | 001328 (10) | gb:BT003850_1636978 | 8e-60 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | |||||
| JMFS014C05 | Sequence | 619 | 001328 (10) | gb:BT003850_1636978 | 7e-45 | Arabidopsis thaliana clone RAFL15-48-D07 (R20842) putative VAMP protein SEC22 (A | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF032D15- AT
____________________________________________________________
consensus AT
. : . : . : . : . : . :
JMFN013D09+ CATTTGAAGTGTCAAACTATAATTATTCGGAA
rJMFF044O21- GTAGTAATATGTAGTATTATTATTACACATTTGAAGTGTCAAACTATAATTATTCGGAA
rJMFF032D15- TGTAGTAATATGTAGTATTATTATTACACATTTGAAGTGTCAAACTATAATTATTCGGAA
____________________________________________________________
consensus TGTAGTAATATGTAGTATTATTATTACACATTTGAAGTGTCAAACTATAATTATTCGGAA
. : . : . : . : . : . :
rJMFF028M01- ATCCTTGATTGAAAATTTTGTATCCATCCAGTCCTTCCCTTGAGCAAAATTTACA
JMFN013D09+ ATACAATCCTTGATTGAAAATTTTGTATCCATCCAGTCCTTCCCTTGAGCAAAATTTACA
rJMFF044O21- ATACAATCCTTGATTGAAAATTTTGTATCCATCCAGTCCTTCCCTTGAGCAAAATTTACA
rJMFF032D15- ATACAATCCTTGATTGAAAATTTTGTATCCATCCAGTCCTTCCCTTGAGCAAAATTTACA
____________________________________________________________
consensus ATACAATCCTTGATTGAAAATTTTGTATCCATCCAGTCCTTCCCTTGAGCAAAATTTACA
. : . : . : . : . : . :
rJMFF028M01- AAGTAAAATTCAGCGAAAGGACAAAATGGGAAAGAAGATACTTAACGGCGGCTGACGTAC
JMFN013D09+ AAGTAAAATTCAGCGAAAGGACAAAATGGGAAAGAAGATACTTAACGGCGGCTGACGTAC
rJMFF044O21- AAGTAAAATTCAGCGAAAGGACAAAATGGGAAAGAAGATACTTAACGGCGGCTGACGTAC
rJMFF032D15- AAGTAAAATTCAGCGAAAGGACAAAATGGGAAAGAAGATACTTAACGGCGGCTGACGTAC
____________________________________________________________
consensus AAGTAAAATTCAGCGAAAGGACAAAATGGGAAAGAAGATACTTAACGGCGGCTGACGTAC
. : . : . : . : . : . :
rJMFF028M01- GTTATTACTAGACACTGACGTCACAGCTGCGGGAGAGCTGATACTTAACGGCGTTTCCGA
JMFN013D09+ GTTATTACTAGACACTGACGTCACAGCTGCGGGAGAGCTGATACTTAACGGCGTTTCCGA
rJMFF044O21- GTTATTACTAGACACTGACGTCACAGCTGCGGGAGAGCTGATACTTAACGGCGTTTCCGA
rJMFF032D15- GTTATTACTAGACACTGACGTCACAGCTGCGGGAGAGCTGATACTTAACGGCGTTTCCGA
JMFN029F19+ AACGGCGTTTCCGA
____________________________________________________________
consensus GTTATTACTAGACACTGACGTCACAGCTGCGGGAGAGCTGATACTTAACGGCGTTTCCGA
. : . : . : . : . : . :
rJMFF028M01- CGACGATTCCGCCGTTCTTAGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
JMFN013D09+ CGACGATTCCGCCGTTCTTAGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
rJMFF044O21- CGACGATTCCGCCGTTCTTAGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
rJMFF032D15- CGACGATTCCGCCTTTCTTAGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
JMFN029F19+ CGACGATTCCGCCGTTCTTAGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
JMFN006J14+ AGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
JMFN005K05+ CCGAAGGGTATGTAAGCGGGGCAGGTGACGT
____________________________________________________________
consensus CGACGATTCCGCCGTTCTTAGGGACGTTACCGAAGGGTATGTAAGCGGGGCAGGTGACGT
. : . : . : . : . : . :
rJMFF028M01- GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
JMFN013D09+ GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
rJMFF044O21- GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
rJMFF032D15- GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
JMFN029F19+ GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
JMFN006J14+ GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
JMFN005K05+ GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
JMFS014C05+ CTTGACGCGGCCGTTAAGTT
JMFF032D15+ CCACTTGACGCGGCCGTTAAGTT
____________________________________________________________
consensus GGAGGTGGTAACGGCCGGAGGTGAAGGAGCCGACTCTCCACTTGACGCGGCCGTTAAGTT
. : . : . : . : . : . :
rJMFF028M01- TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFN013D09+ TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
rJMFF044O21- TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
rJMFF032D15- TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFN029F19+ TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFN006J14+ TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFN005K05+ TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFS014C05+ TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFF032D15+ TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
JMFF028M01+ CTGGCGGAGGTCGGGGCCGTTGAACG
____________________________________________________________
consensus TGACGGTGATCCAAACGGCGCCGGCGTCCTGGTCCTGGCGGAGGTCGGGGCCGTTGAACG
. : . : . : . : . : . :
rJMFF028M01- GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFN013D09+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
rJMFF044O21- GCGCAATGGGGACGTTGTTGCCGTAAATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
rJMFF032D15- GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFN029F19+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFN006J14+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFN005K05+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFS014C05+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFF032D15+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
JMFF028M01+ GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
____________________________________________________________
consensus GCGCAATGGGGACGTTGTTGCCGTAGATGAAGGGGGACCAGAGGTTGGTGTCCTTGTGGC
. : . : . : . : . : . :
rJMFF028M01- CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
JMFN013D09+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
rJMFF044O21- CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
rJMFF032D15- CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
JMFN029F19+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
JMFN006J14+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
JMFN005K05+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGATGGTTGTGGTAGGTGGCGA
JMFS014C05+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
JMFF032D15+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
JMFF028M01+ CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
____________________________________________________________
consensus CCTGGTATACCGGCGGGATAACGGTGTAATAGGTGATTTGCTGGTTGTGGTAGGTGGCGA
. : . : . : . : . : . :
rJMFF028M01- AGGCGTCNAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGANGAGACGG
JMFN013D09+ AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
rJMFF044O21- AGGCGTCAAGGCGGTCGTAGTA-AAGCCGATGCGGCGGTTGGGGTTGTGGG
rJMFF032D15- AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
JMFN029F19+ AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
JMFN006J14+ AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
JMFN005K05+ AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
JMFS014C05+ AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
JMFF032D15+ AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
JMFF028M01+ AGGCGTCGAGGCGGTCGTAGNAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
____________________________________________________________
consensus AGGCGTCGAGGCGGTCGTAGTAGACGCCGATGCGGCGGTTGGGGTTGTGGGAGGAGACGG
. : . : . : . : . : . :
rJMFF028M01- TGACTTGGATGGTGGTGG
JMFN013D09+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAA
rJMFF032D15- TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTANATGGTGG
JMFN029F19+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
JMFN006J14+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
JMFN005K05+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
JMFS014C05+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
JMFF032D15+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
JMFF028M01+ TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
____________________________________________________________
consensus TGACTTGGATGGTGGTGGAGAAGATGTTGGGGGCGGAGACGTTGAAGTTGTAGATGGTGG
. : . : . : . : . : . :
rJMFF032D15- CGTCCTGGA
JMFN029F19+ CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
JMFN006J14+ CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
JMFN005K05+ CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
JMFS014C05+ CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
JMFF032D15+ CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
JMFF028M01+ CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
____________________________________________________________
consensus CGTCCTGGAGGATGAAGCGAGGCTTCTTGGGCTGGAGAACCGCCCAGACGATGAGGATGG
. : . : . : . : . : . :
JMFN029F19+ TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
JMFN006J14+ TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
JMFN005K05+ TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
JMFS014C05+ TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
JMFF032D15+ TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
JMFF028M01+ TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
____________________________________________________________
consensus TGAGGAGGATGAGGAAGAGGAGGATAAGGATGCAGCCGCAGAGTTGCCGGACGGCCTTCT
. : . : . : . : . : . :
JMFN029F19+ GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATTTTTCCGGCGG
JMFN006J14+ GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATTTTTCCGGCGG
JMFN005K05+ GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATTTTTCCGGCGG
JMFS014C05+ GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATT
JMFF032D15+ GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATTTTTCCGGCGG
JMFF028M01+ GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATTTTTCCGGCGG
____________________________________________________________
consensus GCTTCCGGTCTTTGTGGATGCTGCACTCCTTCCCGGACATTTTTTTTATTTTTCCGGCGG
. : . : . : . : . : . :
JMFN029F19+ GTTTTGGTTTTCCGGTNGGCCTTGGGAGGTAAAG
JMFN006J14+ GTTTTGGTTTTCCGGT-GGCCTTGGGAGGTAAAGGTATGTGGGAG
JMFN005K05+ GTTTTGGTTTTCCGGT-GGCCTTGGGAGGTAAAGGTATGTGGGAGAATGGGAAAGGA
JMFF032D15+ GTTTTGGTTTTCCGGT-GGCCTTGGGAGGTAAAGGTATGTGGGAGAATGGGAAAGGA
JMFF028M01+ GTTTTGGTTTTCCGGT-GGCCTTGGGAGGTAAAGGTATGTGGGAGAATGGGAAAGGATAT
____________________________________________________________
consensus GTTTTGGTTTTCCGGT-GGCCTTGGGAGGTAAAGGTATGTGGGAGAATGGGAAAGGATAT