Previous Contig 001311:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028C13Sequence517001311 (2)gb:AF533771_18094701e-40Medicago truncatula lecithine cholesterol acyltransferase-like protein mRNA, com682011111 (2)gb:AE005172_8916266e-38Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC004557_153186
JMFF051M06Sequence615001311 (2)gb:AF533771_18094704e-57Medicago truncatula lecithine cholesterol acyltransferase-like protein mRNA, com565011111 (2)gb:AE005172_8916261e-21Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC004557_153186

Alignment

This contig is upended


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JMFF051M06+ AGGAATTTGGATCCT
                      ____________________________________________________________
consensus AGGAATTTGGATCCT
 
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JMFF051M06+ ACCTGACTTGGATGCCCTTTTGCAGCCAAACCATACCGGAAATCATAGGGTGCTCCGAAC
                      ____________________________________________________________
consensus ACCTGACTTGGATGCCCTTTTGCAGCCAAACCATACCGGAAATCATAGGGTGCTCCGAAC
 
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JMFF051M06+ ATGTTCTTGCCATCCTCGTACCNTAATTGCTCCAATGACTCCACTAATGGTGCCATGTAT
JMFF028C13+ TAATTGCTCCAATGACTCCACTAATGGTGCCATGTAT
                      ____________________________________________________________
consensus ATGTTCTTGCCATCCTCGTACCNTAATTGCTCCAATGACTCCACTAATGGTGCCATGTAT
 
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JMFF051M06+ GCTGAAATGTGCTTGAGATTAGGATCAAGATAGAGAAGTGATTGGGTGGAGCCAAAGTTG
JMFF028C13+ GCTGAAATGTGCTTGAGATTAGGATCAAGATAGAGAAGTGATTGGGTGGAGCCAAAGTTG
                      ____________________________________________________________
consensus GCTGAAATGTGCTTGAGATTAGGATCAAGATAGAGAAGTGATTGGGTGGAGCCAAAGTTG
 
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JMFF051M06+ GGCACTCGAGTTTCAACCCCAGGGGCATTATAGTAATCATCAAGATCAGAGTCATAGTAA
JMFF028C13+ GGCACTCGAGTTTCAACCCCAGGGGCATTATAGTAATCATCAAGATCAGAGTCATAGTAA
                      ____________________________________________________________
consensus GGCACTCGAGTTTCAACCCCAGGGGCATTATAGTAATCATCAAGATCAGAGTCATAGTAA
 
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JMFF051M06+ AGCATCATCCTCTCACTGAAACACTTGGTGAGGGGAGACAAGAGGACACTGGAATCAAAC
JMFF028C13+ AGCATCATCCTCTCACTGAAACACTTGGTGAGGGGAGACAAGAGGACACTGGAATCAAAC
                      ____________________________________________________________
consensus AGCATCATCCTCTCACTGAAACACTTGGTGAGGGGAGACAAGAGGACACTGGAATCAAAC
 
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JMFF051M06+ CACAGCCTGAACCAACCATCGCCATCTTTCTTGACTGGATACCACTTGCACCACAAGCTT
JMFF028C13+ CACAGCCTGAACCAACCATCGCCATCTTTCTTGACTGGATACCACTTGCACCACAAGCTT
                      ____________________________________________________________
consensus CACAGCCTGAACCAACCATCGCCATCTTTCTTGACTGGATACCACTTGCACCACAAGCTT
 
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JMFF051M06+ GTAGGCTTGTACTTTGCAGTCAACCTTGCTTCTAGCTGGTTCCCGCCGTTCCCTGGGATC
JMFF028C13+ GTAGGCTTGTACTTTGCAGTCAACCTTGCTTCTAGCTGGTTCCCGCCGTTCCCTGGGATC
                      ____________________________________________________________
consensus GTAGGCTTGTACTTTGCAGTCAACCTTGCTTCTAGCTGGTTCCCGCCGTTCCCTGGGATC
 
. : . : . : . : . : . :
JMFF051M06+ AGGATCAGAGGGTGGAGGTTGGTGGTGGCTTGACACGTGCACAGCATCACAGCCATTGAG
JMFF028C13+ AGGATCAGAGGGTGGAGGTTGGTGGTGGCTTGACACGTGCACAGCATCACAGCCATTGAG
                      ____________________________________________________________
consensus AGGATCAGAGGGTGGAGGTTGGTGGTGGCTTGACACGTGCACAGCATCACAGCCATTGAG
 
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JMFF051M06+ ACCATGACGGCAACGACGGTGATGTCCAGGTAGTTCATGGGCCGGAAAGTGATGATCGGA
JMFF028C13+ ACCATGACGGCAACGACGGTGATGTCCAGGTAGTTCATGGGCCGGAAAGTGATGATCGGA
                      ____________________________________________________________
consensus ACCATGACGGCAACGACGGTGATGTCCAGGTAGTTCATGGGCCGGAAAGTGATGATCGGA
 
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JMFF051M06+ GTTTGTTGGTGAGAGAAGAGGGGAAGAGAGCGGTGGCGTTTGGGGGCATGTTGGCTAGTC
JMFF028C13+ GTTTGTTGGTGAGAGAAGAGGGGAAGAGAGCGGTGGCGTTTGGGGGCATGTTGGCTAGTC
                      ____________________________________________________________
consensus GTTTGTTGGTGAGAGAAGAGGGGAAGAGAGCGGTGGCGTTTGGGGGCATGTTGGCTAGTC