clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF027B19 | Sequence | 557 | 001278 (3) | pir|T46895|T46895 | 5e-64 | acyl-CoA dehydrogenase (EC 1.3.99.3) [validated] - Arabidopsis thaliana>gb:AB017 | 593 | 012008 (2) | pir|T46895|T46895 | 1e-71 | acyl-CoA dehydrogenase (EC 1.3.99.3) [validated] - Arabidopsis thaliana>gb:AB017 |
JMFN009M14 | Sequence | 618 | 001278 (3) | pir|T46895|T46895 | 8e-96 | acyl-CoA dehydrogenase (EC 1.3.99.3) [validated] - Arabidopsis thaliana>gb:AB017 | |||||
JMSF018D18 | Sequence | 532 | 001278 (3) | pir|T46895|T46895 | 8e-61 | acyl-CoA dehydrogenase (EC 1.3.99.3) [validated] - Arabidopsis thaliana>gb:AB017 | 785 | 012008 (2) | pir|T46895|T46895 | 3e-98 | acyl-CoA dehydrogenase (EC 1.3.99.3) [validated] - Arabidopsis thaliana>gb:AB017 |
This contig is upended
. : . : . : . : . : . :
JMFN009M14+ TCTTTACTATGAATCC
____________________________________________________________
consensus TCTTTACTATGAATCC
. : . : . : . : . : . :
JMFN009M14+ ATTTATCTGGTTTGTACTGGCATTTCTAGCAAAAATGACAAGTATATCTGCAAAAGTACT
____________________________________________________________
consensus ATTTATCTGGTTTGTACTGGCATTTCTAGCAAAAATGACAAGTATATCTGCAAAAGTACT
. : . : . : . : . : . :
JMFN009M14+ GTTTCCAATCCACCGTTTTTGGCCTTCAATGATCCAACCTCCTTCAACCTTTGTTGCAAT
____________________________________________________________
consensus GTTTCCAATCCACCGTTTTTGGCCTTCAATGATCCAACCTCCTTCAACCTTTGTTGCAAT
. : . : . : . : . : . :
JMFN009M14+ TGTTTTCAATGAACTTGCATCACTCCCATACTCCGGTTCTGTAAGACCCCAACAACCAAT
____________________________________________________________
consensus TGTTTTCAATGAACTTGCATCACTCCCATACTCCGGTTCTGTAAGACCCCAACAACCAAT
. : . : . : . : . : . :
JMFN009M14+ AGTGTCAAGCTTGGCCAATGATGGTAAATACTTTTGCTTTTGTATCTCTGACCCACAAAG
JMFF027B19+ ATCTCTGACCCACAAAG
____________________________________________________________
consensus AGTGTCAAGCTTGGCCAATGATGGTAAATACTTTTGCTTTTGTATCTCTGACCCACAAAG
. : . : . : . : . : . :
JMFN009M14+ TCCAATGGTTAGCATAGCTAATGAAGAATGAACCAGAATGAAAGTTGAGCAGCTGGCATC
JMSF018D18+ AATGGTTAGCATAGCTAATGAAGAATGAACCAGAATGAAAGTTGAGCAGCTGGCATC
JMFF027B19+ TCCAATGGTTAGCATAGCTAATGAAGAATGAACCAGAATGAAAGTTGAGCAGCTGGCATC
____________________________________________________________
consensus TCCAATGGTTAGCATAGCTAATGAAGAATGAACCAGAATGAAAGTTGAGCAGCTGGCATC
. : . : . : . : . : . :
JMFN009M14+ AACTCTAGAAACTTCTGCCGTAGCAATGGCACTTGCAGTCACAGAGAGTCCAGGACAGCC
JMSF018D18+ AACTCTAGAAACTTCTGCCGTAGCAATGGCACTTGCAGTCACAGAGAGTCCAGGACAGCC
JMFF027B19+ AACTCTAGAAACTTCTGCCGTAGCAATGGCACTTGCAGTCACAGAGAGTCCAGGACAGCC
____________________________________________________________
consensus AACTCTAGAAACTTCTGCCGTAGCAATGGCACTTGCAGTCACAGAGAGTCCAGGACAGCC
. : . : . : . : . : . :
JMFN009M14+ ATACCCCTTGATGGTGCCACCAGCAACTCCTAAAGCACCAAGTTTTGGAATCACTTCAAA
JMSF018D18+ ATACCCCTTGATGGTGCCACCAGCAACTCCTAAAGCACCAAGTTTTGGAATCACTTCAAA
JMFF027B19+ ATACCCCTTGATGGTGCCACCAGCAACTCCTAAAGCACCAAGTTTTGGAATCACTTCAAA
____________________________________________________________
consensus ATACCCCTTGATGGTGCCACCAGCAACTCCTAAAGCACCAAGTTTTGGAATCACTTCAAA
. : . : . : . : . : . :
JMFN009M14+ TGGAAACTCAGCCTTTTCCCAATACTTTGCCATTAAAGGTGCTACATCTCTTTCCATGCA
JMSF018D18+ TGGAAACTCAGCCTTTTCCCAATACTTTGCCATTAAAGGTGCTACATCTCTTTCCATGCA
JMFF027B19+ TGGAAACTCAGCCTTTTCCCAATACTTTGCCATTAAAGGTGCTACATCTCTTTCCATGCA
____________________________________________________________
consensus TGGAAACTCAGCCTTTTCCCAATACTTTGCCATTAAAGGTGCTACATCTCTTTCCATGCA
. : . : . : . : . : . :
JMFN009M14+ TTCTCTCACTCTCATTCTGACACTTTGCTCAGCGGGAGTGAGTAGATCATCAAACTGATA
JMSF018D18+ TTCTCTCACTCTCATTCTGACACTTTGCTCAGCGGGAGTGAGTAGATCATCAAACTGATA
JMFF027B19+ TTCTCTCACTCTCATTCTGACACTTTGCTCAGCGGGAGTGAGTAGATCATCAAACTGATA
____________________________________________________________
consensus TTCTCTCACTCTCATTCTGACACTTTGCTCAGCGGGAGTGAGTAGATCATCAAACTGATA
. : . : . : . : . : . :
JMFN009M14+ ATAGTCAGATGTGCACGGAGGAAACTTTGAAGCTGGAGTTGCTTGGGGAAATGCAACAGA
JMSF018D18+ ATAGTCAGATGTGCACGGAGGAAACTTTGAAGCTGGAGTTGCTTGGGGAAATGCAACAGA
JMFF027B19+ ATAGTCAGATGTGCACGGAGGAAACTTTGAAGCTGGAGTTGCTTGGGGAAATGCAACAGA
____________________________________________________________
consensus ATAGTCAGATGTGCACGGAGGAAACTTTGAAGCTGGAGTTGCTTGGGGAAATGCAACAGA
. : . : . : . : . : . :
JMFN009M14+ AA
JMSF018D18+ AACATCCAAAGCAGGTAAATCAAAATACGAGCTTTTTGCATCCTTGTGCTTTTGCTCTTG
JMFF027B19+ AACATCCAAAGCAGGTAAATCAAAATACGAGCTTTTTGCATCCTTGTGCTTTTGCTCTTG
____________________________________________________________
consensus AACATCCAAAGCAGGTAAATCAAAATACGAGCTTTTTGCATCCTTGTGCTTTTGCTCTTG
. : . : . : . : . : . :
JMSF018D18+ GGTTTCAGATGAAGGAACTTTCATGGTGATCTGTGAAGCAGAATGCAGAGAAAGACGCCG
JMFF027B19+ GGTTTCAGATGAAGGAACTTTCATGGTGATCTGTGAAGCAGAATGCAGAGAAAGACGCCG
____________________________________________________________
consensus GGTTTCAGATGAAGGAACTTTCATGGTGATCTGTGAAGCAGAATGCAGAGAAAGACGCCG
. : . : . : . : . : . :
JMSF018D18+ GACAAGGAGAAGAAAGAAGAATGCTAACGGAACTGTTTGCTTGTGAGATGTTCC
JMFF027B19+ GACAAGGAGAAGAAAGAAGAATGCTAACGGAACTGTTTGCTTGTGAGATGTTCCAAAGAG
____________________________________________________________
consensus GACAAGGAGAAGAAAGAAGAATGCTAACGGAACTGTTTGCTTGTGAGATGTTCCAAAGAG