Previous Contig 001232:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A21Sequence576001232 (5)gb:AC005167_15322283e-38Arabidopsis thaliana chromosome 2 clone F12A24 map mi398, complete sequence.>gb:755011951 (4)gb:AP003872_18346062e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ11
JMFF043O05Sequence634001232 (5)gb:AP003872_18346061e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ11
JMFF046K18Sequence548001232 (5)gb:AP003872_18346061e-32Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ11503011951 (4)gb:AY048281_15617423e-46Arabidopsis thaliana AT5g15220/F8M21_110 mRNA, complete cds.>gb:AY079120_1568181
JMSF046C02Sequence538001232 (5)gb:AP003872_18346064e-52Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ11761001232 (5)gb:AP003872_18346062e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ11

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF043O05+ CCATAGTTCGAGATAAGTGATTTAAAATTGGAGGAAGCAAAATCTAAGT
rJMSF046C02- TAAGTGATTTAAAATTGGCGGAAGCAAAATCTAAGT
                      ____________________________________________________________
consensus CCATAGTTCGAGATAAGTGATTTAAAATTGGCGGAAGCAAAATCTAAGT
 
. : . : . : . : . : . :
JMFF043O05+ AGCAGTCTTCAGCTCGGGATCTGCAGCAGTCGAATATATTGGGTGAAGTACATGACCATC
rJMSF046C02- AGCAGTCTTCAGCCCAGGATCTGCAGCAGTCGAATATATTGGATGAAGAACATGACCATC
JMSF046C02+ TGAAGAACATGACCATC
                      ____________________________________________________________
consensus AGCAGTCTTCAGCTCGGGATCTGCAGCAGTCGAATATATTGGGTGAAGAACATGACCATC
 
. : . : . : . : . : . :
JMFF043O05+ TTTGGGCTCAACATGCACCCACTTACGTCCAGTCAGCTTGTTACGCTCAAACTTGACACA
rJMSF046C02- TTTGGGCTCAACATGCACCCACTTACGTCCAGTCAGCTTGTTACGCTCAAACTTGACACA
JMSF046C02+ TTTGGGCTCAACATGCACCCACTTACGTCCAGTCAGCTTGTTACGCTCAAACTTGACACA
                      ____________________________________________________________
consensus TTTGGGCTCAACATGCACCCACTTACGTCCAGTCAGCTTGTTACGCTCAAACTTGACACA
 
. : . : . : . : . : . :
JMFF043O05+ CCCTTCTTTTAAAGCATAAAGGGTGTGATCTTTACCAATTCCAACGTAATCCCCGGGATG
rJMSF046C02- CCCTTCTTTTAAAGCATAAAGGGTGTGATCTTTACCAATTCCAACATAATCCCCTGGATG
JMSF046C02+ CCCTTCTTTTAAAGCATAAAGGGTGTGATCTTTACCAATTCCAACATAATCCCCTGGATG
JMFF046K18+ CCAATTCCAACGTATTCCCCGGGATG
JMFF026A21+ TTTTAAAGCATAAAGGGTGTGATCTTTACCAATTCCAACGTAATCCCCGGGATG
                      ____________________________________________________________
consensus CCCTTCTTTTAAAGCATAAAGGGTGTGATCTTTACCAATTCCAACGTAATCCCCTGGATG
 
. : . : . : . : . : . :
JMFF043O05+ AAATCGGGTTCCTCTTTGGCGAACAATGATATTTCCAGGGATCACCCTCTCTCCACCGAA
rJMSF046C02- AAATCGGGTTCCTCTTTGGCGAACAATGATATTTCCCGGGATCACCCTCTCTCCACCGAA
JMSF046C02+ AAATCGGGTTCCTCTTTGGCGAACAATGATATTTCCCGGGATCACCCTCTCTCCACCGAA
JMFF046K18+ AAATCGGGTTCCTCTTTGGCGAACAATGATATTTCCAGGGATCACCCTCTCTCCACCGAA
JMFF026A21+ AAATCGGGTTCCTCTTTGGCGAACAATGATATTTCCAGGGATCACCCTCTCTCCACCGAA
                      ____________________________________________________________
consensus AAATCGGGTTCCTCTTTGGCGAACAATGATATTTCCCGGGATCACCCTCTCTCCACCGAA
 
. : . : . : . : . : . :
JMFF043O05+ TTTCTTTACTCCAAGATTCTTGGGCTTTGAGTCACGTCCATTTTTTGTGGATCCCGCCGT
rJMSF046C02- TTTCTTTACTCCAAGATTCTTGGGCTTTGAGTCACGTCCATTTTTTGTGGATCCTGCTGT
JMSF046C02+ TTTCTTTACTCCAAGATTCTTGGGCTTTGAGTCACGTCCATTTTTTGTGGATCCTGCTGT
JMFF046K18+ TTTCTTTACTCCAAGATTCTTGGGCTNTGAGTCACGTCCATTTTTTGTGGATCCCGCTGT
JMFF026A21+ TTTCTTTACTCCAAGATTCTTGGGCTTTGAGTCACGTCCATTTTTTGTGGATCCCGCTGT
                      ____________________________________________________________
consensus TTTCTTTACTCCAAGATTCTTGGGCTTTGAGTCACGTCCATTTTTTGTGGATCCTGCTGT
 
. : . : . : . : . : . :
JMFF043O05+ CTTTTTGGTCGCCCAGCGCCGGAGTACTAAGCTCAATCCCTCCCCAGATGCATCGCTACC
rJMSF046C02- CTTTTTGGTAGCCCAGCGCCGGAGTACTAAGCTCAATCCCTCCCCAGATGCATCGCTACC
JMSF046C02+ CTTTTTGGTAGCCCAGCGCCGGAGTACTAAGCTCAATCCCTCCCCAGATGCATCGCTACC
JMFF046K18+ CTTTTTGGTCGCCCAGCGCCGGAGTACTAAGCTCAATCCCTCCCCAGATGCATCGCTACC
JMFF026A21+ CTTTTTGGTCGCCCAGCGCCGGAGTACTAAGCTCAATCCCTCCCCAGATGCATCGCTACC
                      ____________________________________________________________
consensus CTTTTTGGTCGCCCAGCGCCGGAGTACTAAGCTCAATCCCTCCCCAGATGCATCGCTACC
 
. : . : . : . : . : . :
JMFF043O05+ AGAACTGTATACTGGTGCATTTGATACCAACTCTCTGATATTCAACCTCCTAAACAGTGT
rJMSF046C02- AGAACTGTATACAGGTGCATTTGATACCAACTCTCTGATATTCAACCTCCTAAACAGTGT
JMSF046C02+ AGAACTGTATACAGGTGCATTTGATACCAACTCTCTGATATTCAACCTCCTAAACAGTGT
JMFF046K18+ AGAACTGTATACTGGTGCATTTGATACCAACTCTCTGATATTCAACCTCCTAAACAGTGT
JMFF026A21+ AGAACTGTATACTGGTGCATTTGATACCAACTCTCTGATATTCAACCTCCTAAACAGTGT
                      ____________________________________________________________
consensus AGAACTGTATACTGGTGCATTTGATACCAACTCTCTGATATTCAACCTCCTAAACAGTGT
 
. : . : . : . : . : . :
JMFF043O05+ TGTGAAATTCATGACT-CCTGAAGCAACAAAAAAATGTGCCT
rJMSF046C02- TGCAAAATTCATGACTTCCTTTGCCAAAATGAAACCGATTCAACGAAGGAGAAGGGAATT
JMSF046C02+ TGCAAAATTCATGACTTCCTTTGCCAAAATGAAACCGATTCAACGAAGGAGAAGGGAATT
JMFF046K18+ TGTGAAATTCATGACT------------------CCGATTCAACGAAGGATAAGGGAATT
JMFF026A21+ TGTGAAATTCATGACT------------------CCGATTCAACGAAGGATAAGGGAATT
                      ____________________________________________________________
consensus TGTGAAATTCATGACTTCCTTTGCCAAAATGAAACCGATTCAACGAAGGAGAAGGGAATT
 
. : . : . : . : . : . :
rJMSF046C02- GGATCAGTTCAAAGTGCTACTGGAAAACAAGCTGGGTTCAGCTTCGGAGAATCTCAGTAT
JMSF046C02+ GGATCAGTTCAAAGTGCTACTGGAAAACAAGCTGGGTTCAGCTTCGGAGAATCTCAGTAT
JMFF046K18+ GGATCAGTTCAAAGTGCTACTGGAAAACAAGCTGAGTTCAGCTTTGGAGCATCTCAGTAT
JMFF026A21+ GGATCAGTTCAAAGTGCTACTGGAAAACAAGCTGAGTTCAGCTTTGGAGCATCTCAGTAT
                      ____________________________________________________________
consensus GGATCAGTTCAAAGTGCTACTGGAAAACAAGCTGGGTTCAGCTTCGGAGAATCTCAGTAT
 
. : . : . : . : . : . :
rJMSF046C02- TCCGAAATTTTGAGTATTTGAATG
JMSF046C02+ TCCGAAATTTTGAGTATTTGAATG
JMFF046K18+ TCCGAAATTTTGAGTATTTGAATGTTGGCTGGAGCGTTCCAACTGGTGTGGCGACGGTTG
JMFF026A21+ TCCGAAATTTTGAGTATTTGAATGTTGGCTGGAGCGTTCCAACTGGTGTGGCGACGGTTG
                      ____________________________________________________________
consensus TCCGAAATTTTGAGTATTTGAATGTTGGCTGGAGCGTTCCAACTGGTGTGGCGACGGTTG
 
. : . : . : . : . : . :
JMFF046K18+ AAGCAGAGGAGTACGGTTGAAACGAACGGCTGCTAGTCGGCGACTGGTGCGGCCGTGTGG
JMFF026A21+ AAGCAGAGGAGTACGGTTGAAACGAACGGCTGCTAGTCGGCGACTGGTGCGGCCGTGTGG
                      ____________________________________________________________
consensus AAGCAGAGGAGTACGGTTGAAACGAACGGCTGCTAGTCGGCGACTGGTGCGGCCGTGTGG
 
. : . : . : . : . : . :
JMFF046K18+ TGTCTGGTGGGCGGTGGCGACTGGCGAGGCAGAGGAGGACAGAGACACAGAGCGAGTAGC
JMFF026A21+ TGTCTGGTGGGCGGTGGCGACTGGCGAGGCAGAGGAGGACAGAGACACAGAGCGAGTAGC
                      ____________________________________________________________
consensus TGTCTGGTGGGCGGTGGCGACTGGCGAGGCAGAGGAGGACAGAGACACAGAGCGAGTAGC