clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF025P21 | Sequence | 534 | 001227 (5) | gb:AY086429_1571477 | 1e-15 | Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A | 690 | 001227 (5) | gb:AY086429_1571477 | 1e-16 | Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A |
JMSF010G08 | Sequence | 387 | 001227 (5) | ||||||||
JMSF025F03 | Sequence | 675 | 001227 (5) | gb:AY086429_1571477 | 1e-16 | Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A | 683 | 001227 (5) | gb:AY086429_1571477 | 1e-16 | Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A |
This contig is upended
. : . : . : . : . : . :
rJMSF025F03- TTTAGCTTTGATATAAGTTTGACAGAAGGG
JMSF025F03+ TGATATAAGTTTGACAGAAGGG
rJMFF025P21- TTTAGCTTTGATATAAGTTTGACAGAAGGG
____________________________________________________________
consensus TTTAGCTTTGATATAAGTTTGACAGAAGGG
. : . : . : . : . : . :
rJMSF025F03- GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
JMSF025F03+ GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
rJMFF025P21- GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
____________________________________________________________
consensus GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
. : . : . : . : . : . :
rJMSF025F03- AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
JMSF025F03+ AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
rJMFF025P21- AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
____________________________________________________________
consensus AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
. : . : . : . : . : . :
rJMSF025F03- ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
JMSF025F03+ ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
rJMFF025P21- ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
JMFF025P21+ CGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
____________________________________________________________
consensus ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
. : . : . : . : . : . :
rJMSF025F03- ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
JMSF025F03+ ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
rJMFF025P21- ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
JMFF025P21+ ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
____________________________________________________________
consensus ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
. : . : . : . : . : . :
rJMSF025F03- AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
JMSF025F03+ AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
JMSF010G08+ CTGAACGCTCTCCGAACAGCAGAATCAGAA
rJMFF025P21- AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
JMFF025P21+ AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
____________________________________________________________
consensus AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
. : . : . : . : . : . :
rJMSF025F03- GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
JMSF025F03+ GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
JMSF010G08+ GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
rJMFF025P21- GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
JMFF025P21+ GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
____________________________________________________________
consensus GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
. : . : . : . : . : . :
rJMSF025F03- CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
JMSF025F03+ CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
JMSF010G08+ CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
rJMFF025P21- CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
JMFF025P21+ CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
____________________________________________________________
consensus CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
. : . : . : . : . : . :
rJMSF025F03- CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
JMSF025F03+ CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
JMSF010G08+ CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
rJMFF025P21- CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
JMFF025P21+ CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
____________________________________________________________
consensus CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
. : . : . : . : . : . :
rJMSF025F03- TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
JMSF025F03+ TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
JMSF010G08+ TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
rJMFF025P21- TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
JMFF025P21+ TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
____________________________________________________________
consensus TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
. : . : . : . : . : . :
rJMSF025F03- GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
JMSF025F03+ GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
JMSF010G08+ GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
rJMFF025P21- GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
JMFF025P21+ GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
____________________________________________________________
consensus GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
. : . : . : . : . : . :
rJMSF025F03- GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT
JMSF025F03+ GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT
JMSF010G08+ GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT
rJMFF025P21- GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT
JMFF025P21+ GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACTGAAAGTTC
____________________________________________________________
consensus GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACTGAAAGTTC