Previous Contig 001227:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025P21Sequence534001227 (5)gb:AY086429_15714771e-15Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A690001227 (5)gb:AY086429_15714771e-16Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A
JMSF010G08Sequence387001227 (5)
JMSF025F03Sequence675001227 (5)gb:AY086429_15714771e-16Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A683001227 (5)gb:AY086429_15714771e-16Arabidopsis thaliana clone 250775 mRNA, complete sequence.>gb:BT004005_1637121 A

Alignment

This contig is upended


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rJMSF025F03-                                        TTTAGCTTTGATATAAGTTTGACAGAAGGG
JMSF025F03+                                                 TGATATAAGTTTGACAGAAGGG
rJMFF025P21-                                        TTTAGCTTTGATATAAGTTTGACAGAAGGG
                      ____________________________________________________________
consensus                                           TTTAGCTTTGATATAAGTTTGACAGAAGGG
 
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rJMSF025F03-          GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
JMSF025F03+           GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
rJMFF025P21-          GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
                      ____________________________________________________________
consensus             GATTAAGAAGACGCAATTCATCGAACAGAAGATGTGCATAGCATTTCTAACAGTTTCACG
 
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rJMSF025F03-          AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
JMSF025F03+           AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
rJMFF025P21-          AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
                      ____________________________________________________________
consensus             AAAGTAGAAAAGTTTCAATCTTGCATTGCAGAAGTAGTAGTAGTGGCAGAGGATTGCCTT
 
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rJMSF025F03-          ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
JMSF025F03+           ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
rJMFF025P21-          ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
JMFF025P21+                 CGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
                      ____________________________________________________________
consensus             ATTGTTCGAAGCTGTTGGATCCACTGACTCTCCGGGACCCGACCCGCCCAATCCGGAGCT
 
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rJMSF025F03-          ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
JMSF025F03+           ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
rJMFF025P21-          ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
JMFF025P21+           ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
                      ____________________________________________________________
consensus             ACGCCGCCGAACGAGACACCGCGCATGGCCTCCATGACTCTCGTCGCGTTCTCCGGCGTC
 
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rJMSF025F03-          AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
JMSF025F03+           AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
JMSF010G08+                                         CTGAACGCTCTCCGAACAGCAGAATCAGAA
rJMFF025P21-          AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
JMFF025P21+           AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
                      ____________________________________________________________
consensus             AACGGAGCACTGCGGCGGTTATCGTCGTCTCTGAACGCTCTCCGAACAGCAGAATCAGAA
 
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rJMSF025F03-          GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
JMSF025F03+           GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
JMSF010G08+           GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
rJMFF025P21-          GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
JMFF025P21+           GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
                      ____________________________________________________________
consensus             GCAGCTCGGATCCTCTCCTCCTCTTCTTCCTCTTCATCATCCTCATCGCTCAGATCCAGA
 
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rJMSF025F03-          CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
JMSF025F03+           CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
JMSF010G08+           CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
rJMFF025P21-          CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
JMFF025P21+           CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
                      ____________________________________________________________
consensus             CACGACACTCCGTTCTCAACACAACGCGCGTAGCCGTTCGGCAATCGATTGAAATTGCTA
 
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rJMSF025F03-          CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
JMSF025F03+           CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
JMSF010G08+           CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
rJMFF025P21-          CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
JMFF025P21+           CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
                      ____________________________________________________________
consensus             CCGGACAGATCTCGATCTCCGTTACCGAGATTTGAATGTTGATCGGAGAACTCTTCGTCC
 
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rJMSF025F03-          TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
JMSF025F03+           TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
JMSF010G08+           TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
rJMFF025P21-          TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
JMFF025P21+           TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
                      ____________________________________________________________
consensus             TCGTCATCTCCGTCGCCCGAGGAGATTGGCTGATAGTATTCTGGCGCTTCGTCGGAGTTC
 
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rJMSF025F03-          GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
JMSF025F03+           GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
JMSF010G08+           GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
rJMFF025P21-          GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
JMFF025P21+           GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
                      ____________________________________________________________
consensus             GTATCCGAATCGCTTTCTCCGGCGTTCACTTGGTTGAATTCCGGCGGAGAGTTCGACACC
 
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rJMSF025F03-          GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT        
JMSF025F03+           GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT        
JMSF010G08+           GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT        
rJMFF025P21-          GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACT        
JMFF025P21+           GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACTGAAAGTTC
                      ____________________________________________________________
consensus             GCGTTCATTGTGCCTCAGCTAGAGAGAAACCGATAAGCTGAGATGAATGACTGAAAGTTC