clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF025F01 | Sequence | 526 | 001203 (3) | pir|T45824|T45824 | 3e-18 | hypothetical protein F2K15.50 - Arabidopsis thaliana>gb:ATF2K15_1550525 Arabidop | 740 | 010886 (3) | gb:AK118253_1816240 | 3e-43 | Arabidopsis thaliana At5g53390 mRNA for unknown protein, complete cds, clone: RA |
JMFF047G17 | Sequence | 415 | 001203 (3) | pir|T45824|T45824 | 2e-14 | hypothetical protein F2K15.50 - Arabidopsis thaliana>gb:ATF2K15_1550525 Arabidop | 173 | 010886 (3) | |||
JMFF049D02 | Sequence | 628 | 001203 (3) | gb:AB013388_1512038 | 5e-26 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1. | 654 | 010886 (3) | gb:AP003106_1824766 | 8e-33 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P066 |
This contig is upended
. : . : . : . : . : . :
JMFF049D02+ GGAATTGATGGAGGCGCCGTCGCCCAGAG
____________________________________________________________
consensus GGAATTGATGGAGGCGCCGTCGCCCAGAG
. : . : . : . : . : . :
JMFF049D02+ CATGGTGCATCCGCAGCACCGCCAAGGCCTCGGCGTCGCGTGTTTTGAGGTTCAGAATGT
____________________________________________________________
consensus CATGGTGCATCCGCAGCACCGCCAAGGCCTCGGCGTCGCGTGTTTTGAGGTTCAGAATGT
. : . : . : . : . : . :
JMFF049D02+ GGAGGTCCCACAGAGGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
JMFF025F01+ GGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
____________________________________________________________
consensus GGAGGTCCCACAGAGGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
. : . : . : . : . : . :
JMFF049D02+ CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
JMFF025F01+ CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
____________________________________________________________
consensus CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
. : . : . : . : . : . :
JMFF049D02+ CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCA-TTCATTTTCC
JMFF047G17+ ACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
JMFF025F01+ CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
____________________________________________________________
consensus CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
. : . : . : . : . : . :
JMFF049D02+ CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
JMFF047G17+ CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
JMFF025F01+ CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
____________________________________________________________
consensus CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
. : . : . : . : . : . :
JMFF049D02+ GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
JMFF047G17+ GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
JMFF025F01+ GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
____________________________________________________________
consensus GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
. : . : . : . : . : . :
JMFF049D02+ GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
JMFF047G17+ GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
JMFF025F01+ GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
____________________________________________________________
consensus GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
. : . : . : . : . : . :
JMFF049D02+ CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
JMFF047G17+ CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
JMFF025F01+ CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
____________________________________________________________
consensus CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
. : . : . : . : . : . :
JMFF049D02+ TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
JMFF047G17+ TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
JMFF025F01+ TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
____________________________________________________________
consensus TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
. : . : . : . : . : . :
JMFF049D02+ TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAAGTAC
JMFF047G17+ TTAGCTTATTAGCCTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC
JMFF025F01+ TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC
____________________________________________________________
consensus TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC