Previous Contig 001203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025F01Sequence526001203 (3)pir|T45824|T458243e-18hypothetical protein F2K15.50 - Arabidopsis thaliana>gb:ATF2K15_1550525 Arabidop740010886 (3)gb:AK118253_18162403e-43Arabidopsis thaliana At5g53390 mRNA for unknown protein, complete cds, clone: RA
JMFF047G17Sequence415001203 (3)pir|T45824|T458242e-14hypothetical protein F2K15.50 - Arabidopsis thaliana>gb:ATF2K15_1550525 Arabidop173010886 (3)
JMFF049D02Sequence628001203 (3)gb:AB013388_15120385e-26Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1.654010886 (3)gb:AP003106_18247668e-33Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P066

Alignment

This contig is upended


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JMFF049D02+                                          GGAATTGATGGAGGCGCCGTCGCCCAGAG
                      ____________________________________________________________
consensus                                            GGAATTGATGGAGGCGCCGTCGCCCAGAG
 
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JMFF049D02+           CATGGTGCATCCGCAGCACCGCCAAGGCCTCGGCGTCGCGTGTTTTGAGGTTCAGAATGT
                      ____________________________________________________________
consensus             CATGGTGCATCCGCAGCACCGCCAAGGCCTCGGCGTCGCGTGTTTTGAGGTTCAGAATGT
 
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JMFF049D02+           GGAGGTCCCACAGAGGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
JMFF025F01+                         GGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
                      ____________________________________________________________
consensus             GGAGGTCCCACAGAGGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
 
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JMFF049D02+           CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
JMFF025F01+           CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
                      ____________________________________________________________
consensus             CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
 
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JMFF049D02+           CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCA-TTCATTTTCC
JMFF047G17+                ACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
JMFF025F01+           CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
                      ____________________________________________________________
consensus             CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
 
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JMFF049D02+           CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
JMFF047G17+           CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
JMFF025F01+           CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
                      ____________________________________________________________
consensus             CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
 
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JMFF049D02+           GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
JMFF047G17+           GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
JMFF025F01+           GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
                      ____________________________________________________________
consensus             GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
 
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JMFF049D02+           GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
JMFF047G17+           GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
JMFF025F01+           GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
                      ____________________________________________________________
consensus             GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
 
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JMFF049D02+           CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
JMFF047G17+           CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
JMFF025F01+           CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
                      ____________________________________________________________
consensus             CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
 
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JMFF049D02+           TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
JMFF047G17+           TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
JMFF025F01+           TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
                      ____________________________________________________________
consensus             TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
 
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JMFF049D02+           TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAAGTAC
JMFF047G17+           TTAGCTTATTAGCCTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC
JMFF025F01+           TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC
                      ____________________________________________________________
consensus             TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC