Previous Contig 001203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025F01Sequence526001203 (3)pir|T45824|T458243e-18hypothetical protein F2K15.50 - Arabidopsis thaliana>gb:ATF2K15_1550525 Arabidop740010886 (3)gb:AK118253_18162403e-43Arabidopsis thaliana At5g53390 mRNA for unknown protein, complete cds, clone: RA
JMFF047G17Sequence415001203 (3)pir|T45824|T458242e-14hypothetical protein F2K15.50 - Arabidopsis thaliana>gb:ATF2K15_1550525 Arabidop173010886 (3)
JMFF049D02Sequence628001203 (3)gb:AB013388_15120385e-26Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1.654010886 (3)gb:AP003106_18247668e-33Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P066

Alignment

This contig is upended


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JMFF049D02+ GGAATTGATGGAGGCGCCGTCGCCCAGAG
                      ____________________________________________________________
consensus GGAATTGATGGAGGCGCCGTCGCCCAGAG
 
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JMFF049D02+ CATGGTGCATCCGCAGCACCGCCAAGGCCTCGGCGTCGCGTGTTTTGAGGTTCAGAATGT
                      ____________________________________________________________
consensus CATGGTGCATCCGCAGCACCGCCAAGGCCTCGGCGTCGCGTGTTTTGAGGTTCAGAATGT
 
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JMFF049D02+ GGAGGTCCCACAGAGGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
JMFF025F01+ GGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
                      ____________________________________________________________
consensus GGAGGTCCCACAGAGGTCGGGACATGTCCATTCTCTCTTTGCTCAGCTCGTAAACATAAT
 
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JMFF049D02+ CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
JMFF025F01+ CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
                      ____________________________________________________________
consensus CCTCCACAAACTTCTTATTCTTGCGATGAGTCTCATCACCTTCAACTTCCACTTCCGGTG
 
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JMFF049D02+ CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCA-TTCATTTTCC
JMFF047G17+ ACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
JMFF025F01+ CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
                      ____________________________________________________________
consensus CCTCTACTACCGTAATGTGTTGACTCAAGTCCACCTCCGTCTCAACCCATTTCATTTTCC
 
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JMFF049D02+ CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
JMFF047G17+ CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
JMFF025F01+ CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
                      ____________________________________________________________
consensus CATTTTCTTCCTTATCCACAACCATCAAGCTGGTGAAGCGAGGGTGCTTGAGCAAAGTAT
 
. : . : . : . : . : . :
JMFF049D02+ GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
JMFF047G17+ GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
JMFF025F01+ GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
                      ____________________________________________________________
consensus GAGGCATATTGTGCGTGAAAACATGAGGGTTAATTTTAGAGTTAAAACCCATGATGGCCA
 
. : . : . : . : . : . :
JMFF049D02+ GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
JMFF047G17+ GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
JMFF025F01+ GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
                      ____________________________________________________________
consensus GAATATGGAGATTGAATGCGGGCTCATGAAGCAAACGAGACGACGGGCTCACTGGCTCCT
 
. : . : . : . : . : . :
JMFF049D02+ CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
JMFF047G17+ CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
JMFF025F01+ CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
                      ____________________________________________________________
consensus CCGCTATGGACATATTATTATTTTCCATGCCGGATTTCTGTTTTCTGGTTTCGATGGGTT
 
. : . : . : . : . : . :
JMFF049D02+ TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
JMFF047G17+ TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
JMFF025F01+ TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
                      ____________________________________________________________
consensus TCAGGTTCCGCTCCATTTCCATTACTTAGCTAGCTAGCTAGCTTAATTAGAATACAAACC
 
. : . : . : . : . : . :
JMFF049D02+ TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAAGTAC
JMFF047G17+ TTAGCTTATTAGCCTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC
JMFF025F01+ TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC
                      ____________________________________________________________
consensus TTAGCTTATTAGCTTAATTATATATATATTATTTGGGGCCGGAGGTAGCTAGCTAGGTAC