Previous Contig 001114:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022G09Sequence465001114 (3)pir|T49208|T492081e-13hypothetical protein F27K19.140 - Arabidopsis thaliana>gb:ATF27K19_1550241 Arabi788010125 (2)gb:AP004366_18408451e-49Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P046
JMFF041F12Sequence657001114 (3)pir|T49208|T492085e-44hypothetical protein F27K19.140 - Arabidopsis thaliana>gb:ATF27K19_1550241 Arabi604010125 (2)gb:AP004366_18408452e-18Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P046
JMSF020N16Sequence635019182pir|T49208|T492082e-27hypothetical protein F27K19.140 - Arabidopsis thaliana>gb:ATF27K19_1550241 Arabi753001114 (3)gb:AP004366_18408456e-73Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P046

Alignment

This contig is upended


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rJMSF020N16- ACA
                      ____________________________________________________________
consensus ACA
 
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rJMSF020N16- CCAATAATACAAGNATAGCTATAAACAGAGCTTATACAAGAATCTCCGAATCCNCCAATT
                      ____________________________________________________________
consensus CCAATAATACAAGNATAGCTATAAACAGAGCTTATACAAGAATCTCCGAATCCNCCAATT
 
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rJMSF020N16- ATACATGCNCTGATGCACATGATCTGAATGGGAGAGACTACAGAACCTCTTTTGTCAATG
                      ____________________________________________________________
consensus ATACATGCNCTGATGCACATGATCTGAATGGGAGAGACTACAGAACCTCTTTTGTCAATG
 
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rJMSF020N16- CCATACTCATTCAGACAAAATCATGCTATACAAAAATTCTTTCTCAGAAGTAACTTATTA
                      ____________________________________________________________
consensus CCATACTCATTCAGACAAAATCATGCTATACAAAAATTCTTTCTCAGAAGTAACTTATTA
 
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rJMSF020N16- CCACAACAATAACATCTTCTTCTTCATCCTACGTTGTCAATCCAGAACTTGGGATTCCAT
                      ____________________________________________________________
consensus CCACAACAATAACATCTTCTTCTTCATCCTACGTTGTCAATCCAGAACTTGGGATTCCAT
 
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rJMSF020N16- GCTTTTCANACCATTCCGGCATATGGAACCTTTGGTTGAGCGCTGGCCGGACGTCCTCCT
                      ____________________________________________________________
consensus GCTTTTCANACCATTCCGGCATATGGAACCTTTGGTTGAGCGCTGGCCGGACGTCCTCCT
 
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rJMSF020N16- GCTGAGAGAGATGCTTGAGGAGCGGGAGTATCACGTCCATTAGCTGCTCATCGTGTGGCT
                      ____________________________________________________________
consensus GCTGAGAGAGATGCTTGAGGAGCGGGAGTATCACGTCCATTAGCTGCTCATCGTGTGGCT
 
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rJMSF020N16- GTCCAGCAGAGAATGGAATGCAGGGAATCCCGTTTAATGGTTGCAATAAGAAACTGAAGG
                      ____________________________________________________________
consensus GTCCAGCAGAGAATGGAATGCAGGGAATCCCGTTTAATGGTTGCAATAAGAAACTGAAGG
 
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rJMSF020N16- GATTGTTGTCAACAATAACAATTCGGGATAAATCATTTGATATTCCAGACAAATCCTTCA
                      ____________________________________________________________
consensus GATTGTTGTCAACAATAACAATTCGGGATAAATCATTTGATATTCCAGACAAATCCTTCA
 
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rJMSF020N16- CGTGTTCTCGATATTCCGTGCTAGTGGTTGAAGGCCTGTAAAGTCTGCGAATAAACCGAT
                      ____________________________________________________________
consensus CGTGTTCTCGATATTCCGTGCTAGTGGTTGAAGGCCTGTAAAGTCTGCGAATAAACCGAT
 
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rJMSF020N16- TTTCAACATCTATCTTGTCGACNAGGGGCCTCGCATAGCCTTCGAGTCCAGCAGTAAATA
JMFF041F12+ GGCCTTGCATATCCTTCAAGTCCAGCAGTAAATA
                      ____________________________________________________________
consensus TTTCAACATCTATCTTGTCGACNAGGGGCCTTGCATATCCTTCGAGTCCAGCAGTAAATA
 
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rJMSF020N16- ACACAAGGTCAGCAAATGTGCCAAGTTGTTTCAGAAATTCATGGAGTCCAGGACGTTCAA
JMFF041F12+ ACACAAGGTCAGCAAATNTGCTGAGTTCTTTCAGAAATGTGCGTAATCCAGGGCGTTCAA
                      ____________________________________________________________
consensus ACACAAGGTCAGCAAATGTGCTGAGTTGTTTCAGAAATTTGTGTAGTCCAGGGCGTTCAA
 
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rJMSF020N16- ACACCGTGACGTANTTGATCTTAGGTTTGCCATCGCATTCCTTGTC
JMFF041F12+ ACACTGTGACGTAGTTGATCTTAGGATTGTCATGGCATTCCTTGTCTGAGGAAATGCATT
                      ____________________________________________________________
consensus ACACTGTGACGTAGTTGATCTTAGGTTTGTCATGGCATTCCTTGTCTGAGGAAATGCATT
 
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JMFF041F12+ CAAGTTCAAACCACTTCAACCCAGCTTCTATGGCCTGAGTATGTATTATAGAAGGCAAAG
JMFF022G09+ TCAACCCAGCTTCTATGGCCTGAGTATGTATTATAGAAGGCAAAG
                      ____________________________________________________________
consensus CAAGTTCAAACCACTTCAACCCAGCTTCTATGGCCTGAGTATGTATTATAGAAGGCAAAG
 
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JMFF041F12+ TTGATGTCTCATATGCACAAACCAAAGTTTCATCCAAATCAAGTACCACCGTAAGCCTCG
JMFF022G09+ TTGATGTCTCATATGCACAAACCAAAGTTTCATCCAAATCAAGTACCACCGTAAGCCTCG
                      ____________________________________________________________
consensus TTGATGTCTCATATGCACAAACCAAAGTTTCATCCAAATCAAGTACCACCGTAAGCCTCG
 
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JMFF041F12+ GTAAATGATGCTCATCGGGACAACCAGCGGCGATTTGGAGTGACGGAAGGGCTGAAGAGG
JMFF022G09+ GTAAATGATGCTCATCGGGACAACCAGCGGCGATTTGGAGTGACGGAAGGGCTGAAGAGG
                      ____________________________________________________________
consensus GTAAATGATGCTCATCGGGACAACCAGCGGCGATTTGGAGTGACGGAAGGGCTGAAGAGG
 
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JMFF041F12+ GCGGCGAATCGTCGTTATCCTCAAGTTCGACAACCGGGAGAGGCCGGAACTGCGGAGGAG
JMFF022G09+ GCGGCGAATCGTCGTTATCCTCAAGTTCGACAACCGGGAGAGGCCGGAACTGCGGAGGAG
                      ____________________________________________________________
consensus GCGGCGAATCGTCGTTATCCTCAAGTTCGACAACCGGGAGAGGCCGGAACTGCGGAGGAG
 
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JMFF041F12+ GAGAGGAGAGGAAGGAGGTGTTCCGGAAGCCGACGTACGAGAGGACCTGAGCCGCCGACG
JMFF022G09+ GAGAGGAGAGGAAGGAGGTGTTCCGGAAGCCGACGTACGAGAGGACCTGAGCCGCCGACG
                      ____________________________________________________________
consensus GAGAGGAGAGGAAGGAGGTGTTCCGGAAGCCGACGTACGAGAGGACCTGAGCCGCCGACG
 
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JMFF041F12+ GTGAGCCTCGAACGTTCTGAACGAAGATCTGGTAGAACGCGGCCGCCCAGTTCAGCAGCG
JMFF022G09+ GTGAGCCTCGAACGTTCTGAACGAAGATCTGGTAGAACGCGGCCGCCCAGTTCAGCAGCG
                      ____________________________________________________________
consensus GTGAGCCTCGAACGTTCTGAACGAAGATCTGGTAGAACGCGGCCGCCCAGTTCAGCAGCG
 
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JMFF041F12+ TCCGCCACAGTTGTAGAGTCTTCGGAGCGTAGACTTTGGCTGCTTTAGCCAGCTCTACCA
JMFF022G09+ TCCGCCACAGTTGTAGAGTCTTCGGAGCGTAGACTTTGGCTGCTTTAGCCAGCTCTACCA
                      ____________________________________________________________
consensus TCCGCCACAGTTGTAGAGTCTTCGGAGCGTAGACTTTGGCTGCTTTAGCCAGCTCTACCA
 
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JMFF041F12+ TAACTCCACCGGAACCTCTCCGAACTCCGCCTGGAGCGCGTACGACGGCACGTGTACAAC
JMFF022G09+ TAACTCCACCGGAACCTCTCCGAACTCCGCCTGGAGCGCGTACGACGGCACGTGTACAAC
                      ____________________________________________________________
consensus TAACTCCACCGGAACCTCTCCGAACTCCGCCTGGAGCGCGTACGACGGCACGTGTACAAC