Previous Contig 001044:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005D09Sequence476001044 (3)gb:ATAC013454_15435262e-49Arabidopsis thaliana chromosome III BAC F2O10 genomic sequence, complete sequenc632008368 (3)gb:BT015374_16422027e-66Arabidopsis thaliana At5g26670 mRNA, complete cds.
JMFF006H13Sequence542001044 (3)gb:ATAC013454_15435262e-58Arabidopsis thaliana chromosome III BAC F2O10 genomic sequence, complete sequenc609008368 (3)gb:BT015374_16422027e-66Arabidopsis thaliana At5g26670 mRNA, complete cds.
JMFF020N13Sequence414001044 (3)gb:AY123981_15800645e-16Arabidopsis thaliana At1g57590/T8L23_6 mRNA, complete cds.627008368 (3)gb:BT015374_16422027e-66Arabidopsis thaliana At5g26670 mRNA, complete cds.

Alignment

This contig is upended


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JMFF006H13+ CGTCCATTGCTGCTTCAT
                      ____________________________________________________________
consensus CGTCCATTGCTGCTTCAT
 
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JMFF006H13+ ATATGCGTTGCCCTNTAAACTGCAGCTGTGCAGCCTGATTTTCGCTATCTCCTGAGAATG
JMFF005D09+ CTCCTGAGAATG
                      ____________________________________________________________
consensus ATATGCGTTGCCCTNTAAACTGCAGCTGTGCAGCCTGATTTTCGCTATCTCCTGAGAATG
 
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JMFF006H13+ ATGCACCATCACAGTAGCGAACTTTAATTCTATTCCAATTGTAAAAATCTGGATTCTCCT
JMFF005D09+ ATGCACCATCACAGTAGCGAACTTTAATTCTATTCCAATTGTAAAAATCTGGATTCTCCT
                      ____________________________________________________________
consensus ATGCACCATCACAGTAGCGAACTTTAATTCTATTCCAATTGTAAAAATCTGGATTCTCCT
 
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JMFF006H13+ GCCTTATTGCTCAAAATTCCGGTAAATGGAAGATTCTTTTCCATGAATTTCGATGACCCA
JMFF005D09+ GCCTTATTGCTCAAAATTCCGGTAAATGGAAGATTCTTTTCCATGAATTTCGATGACCCA
JMFF020N13+ TTGCTCAAAATTCCGGTAAATGGAAGATTNTTTTCCATGAATTTCGATGACCCA
                      ____________________________________________________________
consensus GCCTTATTGCTCAAAATTCCGGTAAATGGAAGATTCTTTTCCATGAATTTCGATGACCCA
 
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JMFF006H13+ CGCCGCGTAGTTTTGCGGTAAACACATGATCTAATGGTGTTACACCATCCACCACCCTCC
JMFF005D09+ CGCCGCGTAGTTTTGCGGTAAACACATGATCTAATGGTGTTACACCATCCACCACCCTCC
JMFF020N13+ CGCCGCGTAGTTTTGCGGTAAACACATGATGTAATGGTGTTACACCATCCACCACCNTNC
                      ____________________________________________________________
consensus CGCCGCGTAGTTTTGCGGTAAACACATGATCTAATGGTGTTACACCATCCACCACCCTCC
 
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JMFF006H13+ AATTGAATGACCCAACTGTTAGCTC-CTGATCCATACCCCTCATGAATGTGATAACCGGG
JMFF005D09+ AATTGAATGACCCAACTGTTAGCTC-CTGATCCATACCCCTCATGAATGTGATAACCGGG
JMFF020N13+ AATTGAATGACCCAACTGTTAGCTCGGTGATCCATACCCCTCATGAATGTGATAACCGGG
                      ____________________________________________________________
consensus AATTGAATGACCCAACTGTTAGCTC-CTGATCCATACCCCTCATGAATGTGATAACCGGG
 
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JMFF006H13+ TAACGTCCCATCAAGGCACACAGCTCCTTTAGCATCAGCTCCTTGAATGAGAGTAAGGGG
JMFF005D09+ TAACGTCCCATCAAGGCACACAGCTCCTTTAGCATCAGCTCCTTGAATGAGAGTAAGGGG
JMFF020N13+ TAACGTCCCATCAAGGCACACAGCTCCTTTAGCATCAGCTCCTTGAATGAGAGTAAGGGG
                      ____________________________________________________________
consensus TAACGTCCCATCAAGGCACACAGCTCCTTTAGCATCAGCTCCTTGAATGAGAGTAAGGGG
 
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JMFF006H13+ AACCAAAACAGGGTTAGGATTAGTGTCGGCAGCAGAGGCGGCGCCGCCGTAGACAGATTG
JMFF005D09+ AACCAAAACAGGGTTAGGATTAGTGTCGGCAGCAGAGGCGGCGCCGCCGTAGACAGATTG
JMFF020N13+ AACCAAAACAGGGTTAGGATTAGTGTCGGCAGCAGAGGCGGCGCCGCCGTAGACAGATTG
                      ____________________________________________________________
consensus AACCAAAACAGGGTTAGGATTAGTGTCGGCAGCAGAGGCGGCGCCGCCGTAGACAGATTG
 
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JMFF006H13+ CAAGAATGGCAGCTCCGTTTTGTTGAAGAAAAACTCCTCAAATTCACGGCCTTCAACAGC
JMFF005D09+ CAAGAATGGCAGCTCCGTTTTGTTGAAGAAAAACTCCTCAAATTCACGGCCTTCAACAGC
JMFF020N13+ CAAGAATGGCAGCTCCGTTTTGTTGAAGAAAAACTCCTCAAATTCACGGCCTTCAACAGC
                      ____________________________________________________________
consensus CAAGAATGGCAGCTCCGTTTTGTTGAAGAAAAACTCCTCAAATTCACGGCCTTCAACAGC
 
. : . : . : . : . : . :
JMFF006H13+ CACACCCAACAAAAACCCAATGCAAATCACCCCCAGCAACCCCAT
JMFF005D09+ CACACCCAACAAAAACCCAATGCAAATCACCCCCAGCAACCCCAT
JMFF020N13+ CACACCCAACAAAAACCCAATGCAAATCACCCCCACCAACCCCATCAGCCTCCTCTTCTC
                      ____________________________________________________________
consensus CACACCCAACAAAAACCCAATGCAAATCACCCCCAGCAACCCCATCAGCCTCCTCTTCTC