Previous Contig 001030:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P01Sequence583001030 (5)gb:AP000969_18206851e-30Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01711010315 (5)pir|T04894|T048941e-36hypothetical protein F18F4.200 - Arabidopsis thaliana>gb:ATCHRIV52_1545848 Arabi
JMFF020G17Sequence551001030 (5)gb:AP000969_18206852e-30Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01750010315 (5)pir|T04894|T048942e-36hypothetical protein F18F4.200 - Arabidopsis thaliana>gb:ATCHRIV52_1545848 Arabi
JMFF023I02Sequence432001030 (5)gb:AP000969_18206858e-14Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01714010315 (5)pir|T04894|T048942e-36hypothetical protein F18F4.200 - Arabidopsis thaliana>gb:ATCHRIV52_1545848 Arabi
JMFF043H20Sequence605001030 (5)gb:AP000969_18206851e-30Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01617010315 (5)pir|T04894|T048941e-32hypothetical protein F18F4.200 - Arabidopsis thaliana>gb:ATCHRIV52_1545848 Arabi
JMFF046L23Sequence536001030 (5)gb:AP000969_18206852e-27Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01109010315 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF009P01+ CCATTATGCTCTGTT
JMFF043H20+ CTGTT
                      ____________________________________________________________
consensus CCATTATGCTCTGTT
 
. : . : . : . : . : . :
JMFF009P01+ CCCTTTTCATATGCCCCATCCTCACTAACCTCATGCCACCTTCTATTGGACTTCAGCCTT
JMFF043H20+ CCCTTNTCATATGCCCCATCCTCACTAACCTCATGCCACCTTCTATTGGACTTCAGCCTT
JMFF020G17+ ACTTCAGCCTG
                      ____________________________________________________________
consensus CCCTTTTCATATGCCCCATCCTCACTAACCTCATGCCACCTTCTATTGGACTTCAGCCTT
 
. : . : . : . : . : . :
JMFF009P01+ GGATAGATATGACTATAGTATAATGCTTGCCCAGCAAGACCGAAAGTAGTCAATGTAAAG
JMFF043H20+ GGATAGATATGACTATAGTATAATGCTTGCCCAGCAAGACCGAAAGTAGTCAATGTAAAG
JMFF046L23+ AGATATGACTATAGTATAATGCTTGCCCAGCAAGACCGAAAGTAGTCAATGTAAAG
JMFF020G17+ GGATAGATATGACTATAGTATAATGCTTGCCCAGCAAGACCGAAAGTAGTCAATGTAAAG
                      ____________________________________________________________
consensus GGATAGATATGACTATAGTATAATGCTTGCCCAGCAAGACCGAAAGTAGTCAATGTAAAG
 
. : . : . : . : . : . :
JMFF009P01+ AACACTGCCATGTAGGTTTGCGTTGGAAGAGTAGCTGGTTCTAGAAGGCAGCCAAAGATG
JMFF043H20+ AACACTGCCATGTAGGTTTGCGTTGGAAGAGTAGCTGGTTCTAGAAGGCAGCCAAAGATG
JMFF046L23+ AACACTGCCATGTAGGTTGNCGTTGGAAGAGTAGCTGGTTCTAGAAGGCAGCCAAAGATG
JMFF023I02+ CAGCCAAAGATG
JMFF020G17+ AACACTGCCATGTAGGTTTGCGTTGGAAGAGTAGCTGGTTCTAGAAGGCAGCCAAAGATG
                      ____________________________________________________________
consensus AACACTGCCATGTAGGTTTGCGTTGGAAGAGTAGCTGGTTCTAGAAGGCAGCCAAAGATG
 
. : . : . : . : . : . :
JMFF009P01+ TTGCATAGATCCCCAATAATCCACGTTAACAGGAACCAACAGGAGAGCCCCTCCGTGGAT
JMFF043H20+ TTGCATAGATCCCCAATAATCCACGTTAACAGGAACCAACAGGAGAGCCCCTCCGTGGAT
JMFF046L23+ TTGCATAGATCCCCAATAATCCACGTTAACAGGAACCAACAGGAGAGCCCCTCCGTGGAT
JMFF023I02+ TTGCATAGATCCCCAATAATCCACGTTAACAGGAACCAACAGGAGAGCCCCTCCGTGGAT
JMFF020G17+ TTGCATAGATCCCCAATAATCCACGTTAACAGGAACCAACAGGAGAGCCCCTCCGTGGAT
                      ____________________________________________________________
consensus TTGCATAGATCCCCAATAATCCACGTTAACAGGAACCAACAGGAGAGCCCCTCCGTGGAT
 
. : . : . : . : . : . :
JMFF009P01+ TTCTCCCTGAAGTTAGTCATAATTTGGGGAACCTCAGCCACCGCCCAGCTCAGCACACTC
JMFF043H20+ TTCTCCCTGAAGTTAGTCATAATTTGGGGAACCTCAGCCACCGCCCAGCTCAGCACACTC
JMFF046L23+ TTCTCCCTGAAGTTAGTCATAATTTGGGGAACCTCAGCCACCGCCCAGCTCAGCACACTC
JMFF023I02+ TTCTCCCTGAAGTTAGTCATAATTTGGGGAACCTCAGCCACCGCCCAGCTCCNCACACTC
JMFF020G17+ TTCTCCCTGAAGTTAGTCATAATTTGGGGAACCTCAGCCACCGCCCAGCTCAGCACACTC
                      ____________________________________________________________
consensus TTCTCCCTGAAGTTAGTCATAATTTGGGGAACCTCAGCCACCGCCCAGCTCAGCACACTC
 
. : . : . : . : . : . :
JMFF009P01+ AACGCCCCCAGCACCAGCGAAACTTCATCCTTACTGCTGCACAGGCAGTAGTCCATGTAC
JMFF043H20+ AACGCCCCCAGCACCAGCGAAACTTCATCCTTACTGCTGCACAGGCAGTAGTCCATGTAC
JMFF046L23+ AACGCCCCCAGCACCAGCGAAACTTCATCCTTACTGCTGCACAGGCAGTAGTCCATGTAC
JMFF023I02+ AACGCCCCCAGCACCAGCNAAACTTCATCCTTACTGCTGCACAGGCAGTAGTCCATGTAC
JMFF020G17+ AACGCCCCCAGCACCAGCGAAACTTCATCCTTACTGCTGCACAGGCAGTAGTCCATGTAC
                      ____________________________________________________________
consensus AACGCCCCCAGCACCAGCGAAACTTCATCCTTACTGCTGCACAGGCAGTAGTCCATGTAC
 
. : . : . : . : . : . :
JMFF009P01+ TCCAGCGCCCACTGCGAGCACTTCTGCAGCTGCTCCTCCACTCCCATCCCGCACATCGCC
JMFF043H20+ TCCAGCGCCCACTGCGAGCACTTCTGCAGCTGCTCCTCCACTCCCATCCCGCACATCGCC
JMFF046L23+ TCCAGCGCCCACTGCGAGCACTTCTGCAGCTGCTCTTCCACTCCCATCCCGCACATCGCC
JMFF023I02+ TCCAGCGCCCACTGCGAGCACTTCTGCAGCTGCTCCTCCACTCCCATCCCGCACATCGCC
JMFF020G17+ TCCAGCGCCCACTGCGAGCACTTCTGCAGCTGCTCCTCCACTCCCATCCCGCACATCGCC
                      ____________________________________________________________
consensus TCCAGCGCCCACTGCGAGCACTTCTGCAGCTGCTCCTCCACTCCCATCCCGCACATCGCC
 
. : . : . : . : . : . :
JMFF009P01+ ATTCCGCCGCCGCCTAAAACCTTCCGCTCGTCTCTATCTACGCCTTTCTCTGCACGCACA
JMFF043H20+ ATTCCGCCGCCGCCTAAAACCTTCCGCTCGTCCCTATCTACGCCTTTCTCTGCACGCACA
JMFF046L23+ ATTCCGCCGCCGCCTAAAACCTTCCGCTCGTCCCTATCTACGCCTTTCTCTGCACGCACA
JMFF023I02+ ATTCCGCCGCCGCCTAAAACCTTCCGCTCGTCCCTATCTACGCCTTTCTCTGCACGCACA
JMFF020G17+ ATTCCGCCGCCGCCTAAAACCTTCCGCTCGTCCCTATCTACGCCTTTCTCTGCACGCACA
                      ____________________________________________________________
consensus ATTCCGCCGCCGCCTAAAACCTTCCGCTCGTCCCTATCTACGCCTTTCTCTGCACGCACA
 
. : . : . : . : . : . :
JMFF009P01+ ACACACTTCCGTGCC
JMFF043H20+ ACACACTTCCGTGCCCTATTCGTTCACAAGATACAACGCATCCGTCAGATATGAGCACGA
JMFF046L23+ ACACACTTCCGTGCCCTATTCGTTCACAAGATACAACGCATCCGTCAGATATGAGCACGA
JMFF023I02+ ACACACTTCCGTGCCCTATTCGTTCACAAGATACAACGCATCCGTCAGATATGAGCACGA
JMFF020G17+ ACACACTTCCGTGCCCTATTCGTTCACAAGATACAACGCATCCGTCAGATATGAGCACGA
                      ____________________________________________________________
consensus ACACACTTCCGTGCCCTATTCGTTCACAAGATACAACGCATCCGTCAGATATGAGCACGA
 
. : . : . : . : . : . :
JMFF043H20+ AAACCGATGAATTAAACCTACAAACTCACAACTCGTACAATGAAGATGTGAAGTAA
JMFF046L23+ AAACCGATGAATTAAACCTACAAACTCAGTACTCGTACAATGAAGATGTGAAGTAA
JMFF023I02+ AAACCGATGAATTAAACCTACAAACTCACAACTCGTACAATGAAGATGTGAAGTAA
JMFF020G17+ AAACCGATGAATTAAACCTACAAACTCACAACTCGTACAATGAAGATGTGAAGTAAAAAT
                      ____________________________________________________________
consensus AAACCGATGAATTAAACCTACAAACTCACAACTCGTACAATGAAGATGTGAAGTAAAAAT