Previous Contig 000947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018I10Sequence240000947 (3)gb:AP004776_18449080.024Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P045276011798 (3)
JMFN041C12Sequence614000947 (3)gb:AB007648_15102041e-48Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
JMSF014M10Sequence110000947 (3)287011798 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN041C12+ GCTGCTGGAAAAACCGCGAATTCAACGCAGCCGCCGCCGTTGTCGGCACCGCCATCTCAT
                      ____________________________________________________________
consensus GCTGCTGGAAAAACCGCGAATTCAACGCAGCCGCCGCCGTTGTCGGCACCGCCATCTCAT
 
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JMFN041C12+ GAGGAGCGGCCGCCGCGAAGCTCCAGACCTGTCCAAAGTCCGGCCGAGCCGGAAGCGCCC
                      ____________________________________________________________
consensus GAGGAGCGGCCGCCGCGAAGCTCCAGACCTGTCCAAAGTCCGGCCGAGCCGGAAGCGCCC
 
. : . : . : . : . : . :
JMFN041C12+ AGAACCCTGCTGCGGCCGAGCCCACAACCGTGGCCGCGCCCGCGACATCCTCCTTGTTCC
                      ____________________________________________________________
consensus AGAACCCTGCTGCGGCCGAGCCCACAACCGTGGCCGCGCCCGCGACATCCTCCTTGTTCC
 
. : . : . : . : . : . :
JMFN041C12+ CGCCGTCGTCCAGACCATCCTCCTCGGCCCGCAGCCGCTTCCCGAGAATGAAGGGCGCGG
                      ____________________________________________________________
consensus CGCCGTCGTCCAGACCATCCTCCTCGGCCCGCAGCCGCTTCCCGAGAATGAAGGGCGCGG
 
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JMFN041C12+ GAGCCATGGGCTTGTGGTCGAACGAGGCCGATAGAGAAGGGGCGGTGGAGGAGGAGGTCC
                      ____________________________________________________________
consensus GAGCCATGGGCTTGTGGTCGAACGAGGCCGATAGAGAAGGGGCGGTGGAGGAGGAGGTCC
 
. : . : . : . : . : . :
JMFN041C12+ TGAGGGAGGCGGAAATAGTGGAGAAACTCGCCGGGATAGTTCCGGTGCCGGTGGCGGCTA
                      ____________________________________________________________
consensus TGAGGGAGGCGGAAATAGTGGAGAAACTCGCCGGGATAGTTCCGGTGCCGGTGGCGGCTA
 
. : . : . : . : . : . :
JMFN041C12+ TAATGGAAGGCTCAGCTTGGCGGAGAAGCCACTCGATGGTCTGGCCGTCGGACTTGTGAC
                      ____________________________________________________________
consensus TAATGGAAGGCTCAGCTTGGCGGAGAAGCCACTCGATGGTCTGGCCGTCGGACTTGTGAC
 
. : . : . : . : . : . :
JMFN041C12+ CGAGCTCCCGCGTGAGCTGGAAAACTCTAGCGGCGCAAACGATGGGCATCCGTATGCGCC
                      ____________________________________________________________
consensus CGAGCTCCCGCGTGAGCTGGAAAACTCTAGCGGCGCAAACGATGGGCATCCGTATGCGCC
 
. : . : . : . : . : . :
JMFN041C12+ TCCCCCGGCCGTCGACCTTGCTATGGCGGTCCTTAGCGGGCGGTTTCTTGACTACTACTG
JMSF014M10+ ACTG
JMFF018I10+ TCCCCCGGCCGTNGNCCTTGNTATGGCGGTCCTTAGCGGGCGGTTTNTTGACTNCTNCTG
                      ____________________________________________________________
consensus TCCCCCGGCCGTCGACCTTGCTATGGCGGTCCTTAGCGGGCGGTTTCTTGACTACTACTG
 
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JMFN041C12+ CCAAAGACCCATTCCCGGCGGAAGGGAGCTGTTGCGGGTCGATTAAAGCTCCGGCGTTGG
JMSF014M10+ CCAAAGACCCATTCCCNGCGGAANGGAGCTGTTGCGNNTCGATTAAAGCTCCGGCGTTGG
JMFF018I10+ CCAAAGACCCNTTCCCGGCGGAAGGGAGCTGTTGCGGGTNGANTAAAGCTCCGGCGTTGG
                      ____________________________________________________________
consensus CCAAAGACCCATTCCCGGCGGAAGGGAGCTGTTGCGGGTCGATTAAAGCTCCGGCGTTGG
 
. : . : . : . : . : . :
JMFN041C12+ CCTCCA
JMSF014M10+ CCTCCANCGNCGTCGACATTGGCCGGGTGAAAAGAAGCGGNTAATC
JMFF018I10+ CCTCCCCCGACGTNGACNTTGGGCGGGTGAAAAGAAGCGGATAANGAGGGAGGGAGGGTA
                      ____________________________________________________________
consensus CCTCCACCGACGTCGACATTGGGCGGGTGAAAAGAAGCGGATAATGAGGGAGGGAGGGTA
 
. : . : . : . : . : . :
JMFF018I10+ TGAAAGGAGAAAAAAAGAAGGGAAAAAAAAAACCAGAGAGAAGAAGGGAAACAGGGTTCT
                      ____________________________________________________________
consensus TGAAAGGAGAAAAAAAGAAGGGAAAAAAAAAACCAGAGAGAAGAAGGGAAACAGGGTTCT