Previous Contig 000898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017H13Sequence564000898 (5)pir|E96786|E967868e-22protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi714010862 (6)pir|G86332|G863324e-71F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMFF036F14Sequence557000898 (5)pir|E96786|E967862e-21protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi713010862 (6)pir|G86332|G863322e-71F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMFF049P02Sequence591000898 (5)pir|E96786|E967864e-27protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi597010862 (6)pir|G86332|G863326e-50F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMSF041E18Sequence819000898 (5)gb:AP005092_18476644e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ11735010862 (6)pir|G86332|G863322e-76F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMSF041G05Sequence814000898 (5)pir|E96786|E967863e-64protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi687010862 (6)pir|G86332|G863322e-65F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF041G05+ CCCGGGACAGAAGCGTTAATTNGGGTAAGAGGCCTCGATTCAGTCATGT
JMSF041E18+ GGACAGAAGCGTTAATTTGGGTAAGAGGCCTCGATTCAGTCATGT
                      ____________________________________________________________
consensus CCCGGGACAGAAGCGTTAATTTGGGTAAGAGGCCTCGATTCAGTCATGT
 
. : . : . : . : . : . :
JMSF041G05+ CTTCAGGCCTTTGCCAGCA-TTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
JMSF041E18+ CTTCAGGCCTTTGCCAGCATTTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
                      ____________________________________________________________
consensus CTTCAGGCCTTTGCCAGCATTTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
 
. : . : . : . : . : . :
JMSF041G05+ ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
JMSF041E18+ ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
                      ____________________________________________________________
consensus ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
 
. : . : . : . : . : . :
JMSF041G05+ GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
JMSF041E18+ GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
                      ____________________________________________________________
consensus GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
 
. : . : . : . : . : . :
JMSF041G05+ AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMSF041E18+ AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMFF049P02+ CGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMFF036F14+ AGGTCCCCAGCATCATAC
JMFF017H13+ TTTCATAAGGTCCCCAGCATCATAC
                      ____________________________________________________________
consensus AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
 
. : . : . : . : . : . :
JMSF041G05+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMSF041E18+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF049P02+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF036F14+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF017H13+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
                      ____________________________________________________________
consensus ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
 
. : . : . : . : . : . :
JMSF041G05+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMSF041E18+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF049P02+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF036F14+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF017H13+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
                      ____________________________________________________________
consensus CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
 
. : . : . : . : . : . :
JMSF041G05+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMSF041E18+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF049P02+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF036F14+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF017H13+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
                      ____________________________________________________________
consensus ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
 
. : . : . : . : . : . :
JMSF041G05+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMSF041E18+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACGAAAAATGGA
JMFF049P02+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMFF036F14+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMFF017H13+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
                      ____________________________________________________________
consensus GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
 
. : . : . : . : . : . :
JMSF041G05+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMSF041E18+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF049P02+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF036F14+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF017H13+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
                      ____________________________________________________________
consensus AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
 
. : . : . : . : . : . :
JMSF041G05+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMSF041E18+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF049P02+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF036F14+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF017H13+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
                      ____________________________________________________________
consensus CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
 
. : . : . : . : . : . :
JMSF041G05+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMSF041E18+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF049P02+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF036F14+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF017H13+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
                      ____________________________________________________________
consensus CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
 
. : . : . : . : . : . :
JMSF041G05+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMSF041E18+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF049P02+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF036F14+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF017H13+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
                      ____________________________________________________________
consensus ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
 
. : . : . : . : . : . :
JMSF041G05+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTT
JMSF041E18+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC
JMFF049P02+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC
JMFF036F14+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC
JMFF017H13+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCCGCTGACGAT
                      ____________________________________________________________
consensus AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCCGCTGACGAT