Previous Contig 000898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017H13Sequence564000898 (5)pir|E96786|E967868e-22protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi714010862 (6)pir|G86332|G863324e-71F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMFF036F14Sequence557000898 (5)pir|E96786|E967862e-21protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi713010862 (6)pir|G86332|G863322e-71F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMFF049P02Sequence591000898 (5)pir|E96786|E967864e-27protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi597010862 (6)pir|G86332|G863326e-50F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMSF041E18Sequence819000898 (5)gb:AP005092_18476644e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ11735010862 (6)pir|G86332|G863322e-76F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch
JMSF041G05Sequence814000898 (5)pir|E96786|E967863e-64protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi687010862 (6)pir|G86332|G863322e-65F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch

Alignment

This contig is upended


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JMSF041G05+                      CCCGGGACAGAAGCGTTAATTNGGGTAAGAGGCCTCGATTCAGTCATGT
JMSF041E18+                          GGACAGAAGCGTTAATTTGGGTAAGAGGCCTCGATTCAGTCATGT
                      ____________________________________________________________
consensus                        CCCGGGACAGAAGCGTTAATTTGGGTAAGAGGCCTCGATTCAGTCATGT
 
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JMSF041G05+           CTTCAGGCCTTTGCCAGCA-TTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
JMSF041E18+           CTTCAGGCCTTTGCCAGCATTTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
                      ____________________________________________________________
consensus             CTTCAGGCCTTTGCCAGCATTTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
 
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JMSF041G05+           ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
JMSF041E18+           ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
                      ____________________________________________________________
consensus             ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
 
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JMSF041G05+           GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
JMSF041E18+           GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
                      ____________________________________________________________
consensus             GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
 
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JMSF041G05+           AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMSF041E18+           AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMFF049P02+                   CGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMFF036F14+                                                     AGGTCCCCAGCATCATAC
JMFF017H13+                                              TTTCATAAGGTCCCCAGCATCATAC
                      ____________________________________________________________
consensus             AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
 
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JMSF041G05+           ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMSF041E18+           ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF049P02+           ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF036F14+           ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF017H13+           ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
                      ____________________________________________________________
consensus             ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
 
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JMSF041G05+           CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMSF041E18+           CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF049P02+           CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF036F14+           CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF017H13+           CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
                      ____________________________________________________________
consensus             CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
 
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JMSF041G05+           ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMSF041E18+           ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF049P02+           ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF036F14+           ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF017H13+           ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
                      ____________________________________________________________
consensus             ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
 
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JMSF041G05+           GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMSF041E18+           GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACGAAAAATGGA
JMFF049P02+           GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMFF036F14+           GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMFF017H13+           GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
                      ____________________________________________________________
consensus             GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
 
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JMSF041G05+           AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMSF041E18+           AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF049P02+           AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF036F14+           AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF017H13+           AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
                      ____________________________________________________________
consensus             AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
 
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JMSF041G05+           CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMSF041E18+           CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF049P02+           CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF036F14+           CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF017H13+           CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
                      ____________________________________________________________
consensus             CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
 
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JMSF041G05+           CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMSF041E18+           CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF049P02+           CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF036F14+           CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF017H13+           CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
                      ____________________________________________________________
consensus             CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
 
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JMSF041G05+           ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMSF041E18+           ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF049P02+           ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF036F14+           ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF017H13+           ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
                      ____________________________________________________________
consensus             ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
 
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JMSF041G05+           AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTT              
JMSF041E18+           AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC         
JMFF049P02+           AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC         
JMFF036F14+           AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC         
JMFF017H13+           AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCCGCTGACGAT
                      ____________________________________________________________
consensus             AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCCGCTGACGAT