clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF017H13 | Sequence | 564 | 000898 (5) | pir|E96786|E96786 | 8e-22 | protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi | 714 | 010862 (6) | pir|G86332|G86332 | 4e-71 | F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch |
JMFF036F14 | Sequence | 557 | 000898 (5) | pir|E96786|E96786 | 2e-21 | protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi | 713 | 010862 (6) | pir|G86332|G86332 | 2e-71 | F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch |
JMFF049P02 | Sequence | 591 | 000898 (5) | pir|E96786|E96786 | 4e-27 | protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi | 597 | 010862 (6) | pir|G86332|G86332 | 6e-50 | F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch |
JMSF041E18 | Sequence | 819 | 000898 (5) | gb:AP005092_1847664 | 4e-55 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ11 | 735 | 010862 (6) | pir|G86332|G86332 | 2e-76 | F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch |
JMSF041G05 | Sequence | 814 | 000898 (5) | pir|E96786|E96786 | 3e-64 | protein F10A5.13 [imported] - Arabidopsis thaliana>gb:AE005173_895104 Arabidopsi | 687 | 010862 (6) | pir|G86332|G86332 | 2e-65 | F6F9.1 protein - Arabidopsis thaliana>gb:AE005172_890955 Arabidopsis thaliana ch |
This contig is upended
. : . : . : . : . : . :
JMSF041G05+ CCCGGGACAGAAGCGTTAATTNGGGTAAGAGGCCTCGATTCAGTCATGT
JMSF041E18+ GGACAGAAGCGTTAATTTGGGTAAGAGGCCTCGATTCAGTCATGT
____________________________________________________________
consensus CCCGGGACAGAAGCGTTAATTTGGGTAAGAGGCCTCGATTCAGTCATGT
. : . : . : . : . : . :
JMSF041G05+ CTTCAGGCCTTTGCCAGCA-TTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
JMSF041E18+ CTTCAGGCCTTTGCCAGCATTTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
____________________________________________________________
consensus CTTCAGGCCTTTGCCAGCATTTTATGGTCTAGGTCGGGATCACCCACCTGAATGTAAAGG
. : . : . : . : . : . :
JMSF041G05+ ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
JMSF041E18+ ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
____________________________________________________________
consensus ACGTTGTCATCAGGATGCGCGTTGACAAGGTAGTCAGTGATCCATTTGAGCGAACCTTTG
. : . : . : . : . : . :
JMSF041G05+ GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
JMSF041E18+ GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
____________________________________________________________
consensus GCGGGTTCTAACTGTTTCACTACCGCCATCTGATCACCATACTCGAGGATCGTCCACGCC
. : . : . : . : . : . :
JMSF041G05+ AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMSF041E18+ AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMFF049P02+ CGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
JMFF036F14+ AGGTCCCCAGCATCATAC
JMFF017H13+ TTTCATAAGGTCCCCAGCATCATAC
____________________________________________________________
consensus AATACTGTCGCAGTATACGCCATCGGGAACCCGAATTTCATAAGGTCCCCAGCATCATAC
. : . : . : . : . : . :
JMSF041G05+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMSF041E18+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF049P02+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF036F14+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
JMFF017H13+ ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
____________________________________________________________
consensus ATTCCTTTACTCAGATCTAGACTCGCTGATTTGCCATCTTTGAGACCGGAATCCCCTCGC
. : . : . : . : . : . :
JMSF041G05+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMSF041E18+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF049P02+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF036F14+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
JMFF017H13+ CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
____________________________________________________________
consensus CACGATATTTTGTTGTCTACCAACTTCCCAGACTTCTGAACATCGAAGAACTGCATTGCG
. : . : . : . : . : . :
JMSF041G05+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMSF041E18+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF049P02+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF036F14+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
JMFF017H13+ ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
____________________________________________________________
consensus ATCTTGAGGGCGTCGCCGTATTTCTGAGTAACGGCGCCGGGAGGCCCGGGAACAGGGGCG
. : . : . : . : . : . :
JMSF041G05+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMSF041E18+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACGAAAAATGGA
JMFF049P02+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMFF036F14+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
JMFF017H13+ GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
____________________________________________________________
consensus GCATCCGGCTCCGACGAGCCGCCGCCGCCGTGTTTCTTCTTCACAAGCACG-AAAATGGA
. : . : . : . : . : . :
JMSF041G05+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMSF041E18+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF049P02+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF036F14+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
JMFF017H13+ AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
____________________________________________________________
consensus AACCCCAATCGCCGCCGCAACTATCACCACCAGCAGCCACCCGCACCAACCCCCTTTCGA
. : . : . : . : . : . :
JMSF041G05+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMSF041E18+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF049P02+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF036F14+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
JMFF017H13+ CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
____________________________________________________________
consensus CCTCGACTTATCCCCCATTTTCTCCCCACCTTTTATACAGGAACTTCTTTGAGTTCTTCC
. : . : . : . : . : . :
JMSF041G05+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMSF041E18+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF049P02+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF036F14+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
JMFF017H13+ CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
____________________________________________________________
consensus CACAAAAATCAAATCTTTCTTCTTTTCTTCTTCTTTTGAGCTTGAATGTTGAGAATGGAA
. : . : . : . : . : . :
JMSF041G05+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMSF041E18+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF049P02+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF036F14+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
JMFF017H13+ ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
____________________________________________________________
consensus ATGTCGGTGAGAGGAGTGGAGAGATGTATGGTTGATAGGGGCAGAGAAAAACAGTTGGTG
. : . : . : . : . : . :
JMSF041G05+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTT
JMSF041E18+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC
JMFF049P02+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC
JMFF036F14+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCC
JMFF017H13+ AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCCGCTGACGAT
____________________________________________________________
consensus AGTCTGTAAAAATGGGCTTTGCTGATGCAACACAGCACCGACAGTTAACCCGCTGACGAT