Previous Contig 000744:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014F15Sequence601000744 (4)751004144 (3)gb:AP003350_18285462e-08Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P070
JMFS104H02Sequence565000744 (4)gb:AE005173_8926390.043Arabidopsis thaliana chromosome 1, bottom arm complete sequence.>gb:AC007915_153
JMFS139B05Sequence624000744 (4)
JMFS152E05Sequence627000744 (4)

Alignment

This contig is upended


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JMFS104H02+                                                     ATTAGCAGCCGCAACTGC
                      ____________________________________________________________
consensus                                                       ATTAGCAGCCGCAACTGC
 
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JMFS104H02+           AGGAGCAAAGGCTGAGGGTTGCTGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
JMFS139B05+                                 TGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
JMFS152E05+                                 TGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
JMFF014F15+                                                                      G
                      ____________________________________________________________
consensus             AGGAGCAAAGGCTGAGGGTTGCTGACTGGTATGCTGCATAGGTGCACTCTGATTTGCAGG
 
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JMFS104H02+           TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
JMFS139B05+           TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
JMFS152E05+           TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
JMFF014F15+           TGGCACCCAGGGTTGTCCTACAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
                      ____________________________________________________________
consensus             TGGCACCCAGGGTTGTCCTCCAGCTGTGAATGCTGGTGTACTTATCTGGGATGACATGTT
 
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JMFS104H02+           GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
JMFS139B05+           GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
JMFS152E05+           GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAA--CAGGCATGTGATTATTCCC
JMFF014F15+           GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
                      ____________________________________________________________
consensus             GATGCCACTGTTTGTCTGGCCAAAAGAAGATGCTGCAAAACCAGGCATGTGATTATTCCC
 
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JMFS104H02+           AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
JMFS139B05+           AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
JMFS152E05+           AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
JMFF014F15+           AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
                      ____________________________________________________________
consensus             AGAAGGAATCATTTGTTGAGGCTGCATTGACGCAGATGGAATAGGCATATTTGGTTGCAT
 
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JMFS104H02+           CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
JMFS139B05+           CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
JMFS152E05+           CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
JMFF014F15+           CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
                      ____________________________________________________________
consensus             CTGAATTGGCTGGGATGAAGGTATGTGACCAGGGCGTGGAGGAAAATGCTGCATTGGTTG
 
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JMFS104H02+           AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
JMFS139B05+           AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
JMFS152E05+           AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
JMFF014F15+           AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
                      ____________________________________________________________
consensus             AGAAAATTGCATTGCTTGACTTTGTCCAGGACCCATACCAATGTTTGGCATTTGTACAGG
 
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JMFS104H02+           TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
JMFS139B05+           TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
JMFS152E05+           TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
JMFF014F15+           TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
                      ____________________________________________________________
consensus             TGGAGCAAACGGCTGTCCTTGTTGTGCAGGTGCTCCAGGTTGAAATTGCATGGGAAACGA
 
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JMFS104H02+           ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
JMFS139B05+           ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
JMFS152E05+           ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
JMFF014F15+           ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
                      ____________________________________________________________
consensus             ACCATAACCATGGGGCGCCATGGGTCCACCTGGATGTGGCCGAAGAGGCTGTGCACCAGA
 
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JMFS104H02+           TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
JMFS139B05+           TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
JMFS152E05+           TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
JMFF014F15+           TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
                      ____________________________________________________________
consensus             TGGCGGTGGATTAGTTGCCATGCCAGCACATACACAATACTTCAACTTCCCAACAAGGCA
 
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JMFS104H02+           GCCTGAA                                                     
JMFS139B05+           GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
JMFS152E05+           GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
JMFF014F15+           GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
                      ____________________________________________________________
consensus             GCCTGAACTGAAGAAAGATCGCCCGCGAAGGTTTATACAGATTGGTTTCTAAAAGCGGTG
 
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JMFS139B05+           TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGT              
JMFS152E05+           TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGT              
JMFF014F15+           TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGTGAAGTGTAAACCAT
                      ____________________________________________________________
consensus             TTTTCTGGGAGCAGGGGAGTTTGATAGATTTCAGAACGTGTAATGTGAAGTGTAAACCAT