Previous Contig 000665:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012K19Sequence507000665 (8)pir|A96715|A967151e-28protein F4N2.4 [imported] - Arabidopsis thaliana>gb:AE005173_894519 Arabidopsis 803008781 (6)gb:AC090874_17345604e-42Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMFS123D06Sequence577000665 (8)gb:AC090874_17345607e-30Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMFS167D04Sequence623000665 (8)gb:AC090874_17345608e-30Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMSF026A14Sequence677000665 (8)pir|A96715|A967155e-33protein F4N2.4 [imported] - Arabidopsis thaliana>gb:AE005173_894519 Arabidopsis 753008781 (6)gb:AC090874_17345604e-35Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMSF034G17Sequence683000665 (8)pir|A96715|A967152e-34protein F4N2.4 [imported] - Arabidopsis thaliana>gb:AE005173_894519 Arabidopsis 763008781 (6)gb:AC090874_17345603e-37Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMSF035D19Sequence667000665 (8)gb:AC090874_17345609e-30Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb772008781 (6)gb:AC090874_17345602e-39Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMSF041K02Sequence526000665 (8)gb:AC090874_17345603e-29Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb591008781 (6)gb:AC090874_17345603e-10Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb
JMSF044C23Sequence721000665 (8)gb:AC090874_17345602e-38Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb746008781 (6)gb:AC090874_17345605e-39Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence.>gb

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044C23+ TCTTCTTTATCCTTCGCTTTTTGAGCCTTGAAGAATTTACTCTTCAAA
JMSF034G17+ TCAAA
JMSF026A14+ TCAAA
                      ____________________________________________________________
consensus TCTTCTTTATCCTTCGCTTTTTGAGCCTTGAAGAATTTACTCTTCAAA
 
. : . : . : . : . : . :
JMSF044C23+ ATGATTTCTTCCATCACTTCTTTCTTGGATTTTTGCCTATCTTCCTGTCCTTCCACCAGA
JMSF034G17+ ATGATTTCTTCCATCACTTCTTTCTTGGATTTTTGCCTATCTTCCTGTCCTTCCACCAGA
JMSF026A14+ ATGA-TTCTTCCATCACTTCTTTCTTGGATTTTTGCCTATCTTCCTGTCCTTCCACCAGA
JMSF035D19+ TCCACCAGA
                      ____________________________________________________________
consensus ATGATTTCTTCCATCACTTCTTTCTTGGATTTTTGCCTATCTTCCTGTCCTTCCACCAGA
 
. : . : . : . : . : . :
JMSF044C23+ CCACGTTGCATAACCTGTGATCCATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTTG
JMSF034G17+ CCACGTTGCATAACCTGTGATCCATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTTG
JMFS123D06+ ATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTTG
JMSF026A14+ CCACGTTGCATAACCTGTGATCCATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTTG
JMFS167D04+ CTGTAATCCATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTGN
JMSF035D19+ CCACGTTGCATAACCTGTGATCCATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTTG
                      ____________________________________________________________
consensus CCACGTTGCATAACCTGTGATCCATGAGAATCAAGTTGTTCCAAGATAGCTGACCTCTTG
 
. : . : . : . : . : . :
JMSF044C23+ TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
JMSF034G17+ TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
JMFS123D06+ TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
JMSF026A14+ TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
JMFS167D04+ TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
JMSF035D19+ TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
                      ____________________________________________________________
consensus TCACCATCATTGAGTCCATCATCTTCATCCTCATCGAATGGTACTTCATCCTCGAAATCA
 
. : . : . : . : . : . :
JMSF044C23+ TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMSF034G17+ TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMFS123D06+ TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMSF026A14+ TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMFS167D04+ TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMSF041K02+ GAGAATCCAACATNTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMSF035D19+ TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
JMFF012K19+ TCTTCTTCCCCATCCGACAAGTTATAC
                      ____________________________________________________________
consensus TCCCTTCCTCCTGAGAATCCAACATCTAATTCCTCTTCTTCCCCATCCGACAAGTTATAC
 
. : . : . : . : . : . :
JMSF044C23+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMSF034G17+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMFS123D06+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMSF026A14+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMFS167D04+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMSF041K02+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMSF035D19+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
JMFF012K19+ TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
                      ____________________________________________________________
consensus TTGCTTTTTTTCTTCAATTTCAACCTTCGTTCGCGCTGAGACCTGAGAATAGCTTTATCG
 
. : . : . : . : . : . :
JMSF044C23+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMSF034G17+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMFS123D06+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMSF026A14+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMFS167D04+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMSF041K02+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMSF035D19+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
JMFF012K19+ AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
                      ____________________________________________________________
consensus AACTCCCCAAGCTCTTCATTCTGCTCCCCAATTCTCTTGTCAACAAACACTGAAGACTTC
 
. : . : . : . : . : . :
JMSF044C23+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMSF034G17+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMFS123D06+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMSF026A14+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMFS167D04+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMSF041K02+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMSF035D19+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
JMFF012K19+ GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
                      ____________________________________________________________
consensus GCACTTTGCTCATACTCCTTCAGCAGCGTATTCTTCCTCTTTTCTATGGCGAGAGAGCGG
 
. : . : . : . : . : . :
JMSF044C23+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMSF034G17+ GCGAGGCCGATACGGCGTTCTTCTCCTNTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMFS123D06+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMSF026A14+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMFS167D04+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMSF041K02+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMSF035D19+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
JMFF012K19+ GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
                      ____________________________________________________________
consensus GCGAGGCCGATACGGCGTTCTTCTCCTTTGCGTTTCTTGCCGAGGATGTCAAATTTCCGG
 
. : . : . : . : . : . :
JMSF044C23+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
JMSF034G17+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
JMFS123D06+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
JMSF026A14+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
JMFS167D04+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
JMSF041K02+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGGGTTTCATGCCTATGGCC
JMSF035D19+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGGGTTTCATGCCTATGGCC
JMFF012K19+ CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
                      ____________________________________________________________
consensus CGAGACCAGATGGCTTCGAAAGGATTGGGAGCGGGAGCTTTGAGTTTCATGCCTATGGCC
 
. : . : . : . : . : . :
JMSF044C23+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMSF034G17+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMFS123D06+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMSF026A14+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMFS167D04+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMSF041K02+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMSF035D19+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
JMFF012K19+ TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
                      ____________________________________________________________
consensus TTTGGCCCGGACTTGTTCTTCTTCTTCCGCTTCTTCGCATTGTCGTTCTTTGTAGGATTT
 
. : . : . : . : . : . :
JMSF044C23+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMSF034G17+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMFS123D06+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMSF026A14+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMFS167D04+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMSF041K02+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMSF035D19+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
JMFF012K19+ GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
                      ____________________________________________________________
consensus GATTTCTTCCCCATGGTTGAAATTCGCTGGAAACTGGAGGAAAGGGAGCTGTCTTGGTGA
 
. : . : . : . : . : . :
JMSF044C23+ CTATCCCTCTCT
JMSF034G17+ CTATCCCTCTCT
JMSF026A14+ CTATCCCTCTCT
JMFS167D04+ CTATCCCTCTCTGGGAGTTTGGGAGAACAGGGGTTAG
JMSF041K02+ TTATCCCTCTCTGGGAGTTTGGGAGAACAGGGGTTAGGGTTTTAGGATTTTTGGGA
JMSF035D19+ TTATCCCTCTCTGGGAGTTTGGGAGAACAGGGGTTAGGGTTTTAGGATTTTTGGGA
JMFF012K19+ CTATCCCTCTCTGGGAGTTTGGGAGAACAGGGGTTAGGGTTTTAGGATTTTTGGGACGAT
                      ____________________________________________________________
consensus CTATCCCTCTCTGGGAGTTTGGGAGAACAGGGGTTAGGGTTTTAGGATTTTTGGGACGAT