Previous Contig 000658:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012I06Sequence541000658 (2)741011473 (2)gb:AP005295_18500467e-32Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ16
JMSF008O02Sequence323000658 (2)753011473 (2)gb:AP005295_18500469e-32Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ16

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF012I06+ G
                      ____________________________________________________________
consensus G
 
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JMFF012I06+ AGATCAATTCACGAGAAGCCAGATGGGCTATTGGCTGCTTATTCCTCAAACTGCGGGTCC
                      ____________________________________________________________
consensus AGATCAATTCACGAGAAGCCAGATGGGCTATTGGCTGCTTATTCCTCAAACTGCGGGTCC
 
. : . : . : . : . : . :
JMFF012I06+ TATGGCTGCTAGCTTCAATATTTGGTAAAGCATCACGAGATATGTCCTCTTTAAAGCTAC
                      ____________________________________________________________
consensus TATGGCTGCTAGCTTCAATATTTGGTAAAGCATCACGAGATATGTCCTCTTTAAAGCTAC
 
. : . : . : . : . : . :
JMFF012I06+ TACTACTTTCTGATGAAGTTCCAGGTTCAAATTCGGAACTAGCATACCCAACTTCTGCAC
                      ____________________________________________________________
consensus TACTACTTTCTGATGAAGTTCCAGGTTCAAATTCGGAACTAGCATACCCAACTTCTGCAC
 
. : . : . : . : . : . :
JMSF008O02+ ATATCATTAATTGGAGCTTGA-TTT
JMFF012I06+ TAAATATTGAAGATTCTGTTACAGTTTCTTGAGAAATATCATTAATTGGAGCTTGATTTT
                      ____________________________________________________________
consensus TAAATATTGAAGATTCTGTTACAGTTTCTTGAGAAATATCATTAATTGGAGCTTGATTTT
 
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JMSF008O02+ CCAAGGAACTTATTGGTGAGTTTTGAGGATAATCTTCAAGCTCGAGGGTTGAACGAGAAG
JMFF012I06+ CCAAGGAACTTATTGGTGAGTTTTGAGGATAATCTTCAAGCTCGAGGGTTGAACGAGAAG
                      ____________________________________________________________
consensus CCAAGGAACTTATTGGTGAGTTTTGAGGATAATCTTCAAGCTCGAGGGTTGAACGAGAAG
 
. : . : . : . : . : . :
JMSF008O02+ TGGAGGCACCACAAAGGAGAGAAGACAGTCTGTGCTTTGATGCCTTGGGTCTTGACTGAG
JMFF012I06+ TGGAGGCACCACAAAGGAGAGAAGACAGTCTGTGCTTTGATGCCTTGGGTCTTGACTGAG
                      ____________________________________________________________
consensus TGGAGGCACCACAAAGGAGAGAAGACAGTCTGTGCTTTGATGCCTTGGGTCTTGACTGAG
 
. : . : . : . : . : . :
JMSF008O02+ AAGACCCGGAGCCAGAGGATCTTTTGGGTGGCGAAGATGATGATAAAGAACCCCCGATGC
JMFF012I06+ AAGACCCGGAGCCAGAGGATCTTTTGGGTGGCGAAGATGATGATAAAGAACCCCCGATGC
                      ____________________________________________________________
consensus AAGACCCGGAGCCAGAGGATCTTTTGGGTGGCGAAGATGATGATAAAGAACCCCCGATGC
 
. : . : . : . : . : . :
JMSF008O02+ CTAAGCGACTGCTGCTAGAGCCCATGCTGGTAAAGATGGAAAGTTCAATTCACAGTATTT
JMFF012I06+ CTAAGCGACTGCTGCTAGAGCCCATGCTGGTAAAGATGGAAAGTTCAATTCACAGTATTT
                      ____________________________________________________________
consensus CTAAGCGACTGCTGCTAGAGCCCATGCTGGTAAAGATGGAAAGTTCAATTCACAGTATTT
 
. : . : . : . : . : . :
JMSF008O02+ TCGGGGAAATGGAAGACAGAGAGCGGGAGAGAGAGAAAGGCGCACAGACATGAATGGC
JMFF012I06+ TCGGGGAAATGGAAGACAGAGAGCGGGAGAGAGAGAAAGGCGCACAGACATGAATGGCGA
                      ____________________________________________________________
consensus TCGGGGAAATGGAAGACAGAGAGCGGGAGAGAGAGAAAGGCGCACAGACATGAATGGCGA