Previous Contig 000538:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010B16Sequence588000538 (5)gb:AY039977_15604815e-15Arabidopsis thaliana unknown protein (At4g28570) mRNA, complete cds.723002557 (6)gb:AE016959_10230693e-43Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence.>gb:AC07
JMFF029G05Sequence583000538 (5)gb:AY039977_15604815e-15Arabidopsis thaliana unknown protein (At4g28570) mRNA, complete cds.724002557 (6)pir|T05821|T058211e-61hypothetical protein T5K18.160 - Arabidopsis thaliana>gb:ATCHRIV50_1545778 Arabi
JMFF034K18Sequence543000538 (5)gb:AY039977_15604816e-17Arabidopsis thaliana unknown protein (At4g28570) mRNA, complete cds.724002557 (6)pir|T05821|T058212e-62hypothetical protein T5K18.160 - Arabidopsis thaliana>gb:ATCHRIV50_1545778 Arabi
JMSF048A14Sequence696000538 (5)pir|T05821|T058212e-21hypothetical protein T5K18.160 - Arabidopsis thaliana>gb:ATCHRIV50_1545778 Arabi695002557 (6)pir|T05821|T058212e-61hypothetical protein T5K18.160 - Arabidopsis thaliana>gb:ATCHRIV50_1545778 Arabi
JMSF050H17Sequence641000538 (5)pir|T05821|T058215e-61hypothetical protein T5K18.160 - Arabidopsis thaliana>gb:ATCHRIV50_1545778 Arabi710002557 (6)pir|T05821|T058214e-68hypothetical protein T5K18.160 - Arabidopsis thaliana>gb:ATCHRIV50_1545778 Arabi

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF050H17+ CGAAGGTGCACCACCCGCAGT
                      ____________________________________________________________
consensus CGAAGGTGCACCACCCGCAGT
 
. : . : . : . : . : . :
JMSF050H17+ AGTGATCGGACGGCGCGTTTTGCGGGATGTTCACGACCGGATAACATAATTCCCGACAAC
                      ____________________________________________________________
consensus AGTGATCGGACGGCGCGTTTTGCGGGATGTTCACGACCGGATAACATAATTCCCGACAAC
 
. : . : . : . : . : . :
JMSF050H17+ CTTTTCTCAAAACCATGTTTTGAAAACTCTCGTCCTCGCATTCACGTTGTACTCCCATTT
                      ____________________________________________________________
consensus CTTTTCTCAAAACCATGTTTTGAAAACTCTCGTCCTCGCATTCACGTTGTACTCCCATTT
 
. : . : . : . : . : . :
JMSF050H17+ TCCCACAAACAGTGTCCATGGCCTTNTGGTAAACGTCGCTTCCGAATAACTCAAGCCCGT
                      ____________________________________________________________
consensus TCCCACAAACAGTGTCCATGGCCTTNTGGTAAACGTCGCTTCCGAATAACTCAAGCCCGT
 
. : . : . : . : . : . :
JMSF050H17+ GGACTTCGCACCATTCCCGGAGAACATACGGCGGAGTTTTGATAGAAGCGGACCAGTTCA
                      ____________________________________________________________
consensus GGACTTCGCACCATTCCCGGAGAACATACGGCGGAGTTTTGATAGAAGCGGACCAGTTCA
 
. : . : . : . : . : . :
JMSF050H17+ CGGCTGAGCCGCCGCCCACGGTGGAGCCGGCGAGGAGCACCATATCCAAATCCTTCGTCA
                      ____________________________________________________________
consensus CGGCTGAGCCGCCGCCCACGGTGGAGCCGGCGAGGAGCACCATATCCAAATCCTTCGTCA
 
. : . : . : . : . : . :
JMSF050H17+ TTAACAGTCCCCCGCCTAAGAACATTTTATCCATAGAAGGCCCTTCAAGGAGCGACAGAT
JMSF048A14+ CTAAGAACATTTTATCCATAGAAGGCCCTTCAAGGAGCGACAGAT
                      ____________________________________________________________
consensus TTAACAGTCCCCCGCCTAAGAACATTTTATCCATAGAAGGCCCTTCAAGGAGCGACAGAT
 
. : . : . : . : . : . :
JMSF050H17+ TGGTTCTCGCATAATAGTTCCCTTTCTCCAAGACGAGAACTTTATAGCCGGCGGTGGCAA
JMSF048A14+ TGGTTCTCGCATAATAGTTCCCTTTCTCCAAGACGAGAACTTTATAGCCGGCGGTGGCAA
                      ____________________________________________________________
consensus TGGTTCTCGCATAATAGTTCCCTTTCTCCAAGACGAGAACTTTATAGCCGGCGGTGGCAA
 
. : . : . : . : . : . :
JMSF050H17+ GAACGCCGGAAATAACCCCGCCGCCGCATCCGGAGCCGACCACCACCGCATCGCACTCGA
JMSF048A14+ GAACGCCGGAAATAACCCCGCCGCCGCATCCGGAGCCGACCACCACCGCATCGCACTCGA
                      ____________________________________________________________
consensus GAACGCCGGAAATAACCCCGCCGCCGCATCCGGAGCCGACCACCACCGCATCGCACTCGA
 
. : . : . : . : . : . :
JMSF050H17+ TGACGAAAGACGGCCCCGGGGGCTTCGGTTTTGCGACGGAACAACCTAGTTTCGTCAGCC
JMSF048A14+ TGACGAAAGACGGCCCCGGGGGCTTCGGTTTTGCGACGGAACAACCTAGTTTCGTCAGCC
                      ____________________________________________________________
consensus TGACGAAAGACGGCCCCGGGGGCTTCGGTTTTGCGACGGAACAACCTAGTTTCGTCAGCC
 
. : . : . : . : . : . :
JMSF050H17+ TGTTGAAGACATGTTCTTCTGGTAGATTCAGATCAATGATTCCTTTGTACAGAGGTCCAA
JMSF048A14+ TGTTGAAGACATGTTCTTCTGGTAGATTCAGATCAATGATTCCTTTGTACAGAGGTCCAA
                      ____________________________________________________________
consensus TGTTGAAGACATGTTCTTCTGGTAGATTCAGATCAATGATTCCTTTGTACAGAGGTCCAA
 
. : . : . : . : . : . :
JMSF050H17+ ACAGCAATTCTTCGATA
JMSF048A14+ ACAGCAATTCTTCGATATCATCTTCATGATCGTGATGCTTCTGTTTCTTTTGTTTTTCAG
JMFF029G05+ TCATCTTCATGATCGTGATGCTTCTGTTTCTTTTGTTTTTCAG
JMFF034K18+ TCAG
JMFF010B16+ TCATCTTCATGATCGTGATGCTTCTGTTTCTTTTGTTTTTCAG
                      ____________________________________________________________
consensus ACAGCAATTCTTCGATATCATCTTCATGATCGTGATGCTTCTGTTTCTTTTGTTTTTCAG
 
. : . : . : . : . : . :
JMSF048A14+ AAATGGAAGGGTCGGGACCACAATA-CCCTATTGCTTTCCAACTTGGGTTATCCCCCTTA
JMFF029G05+ AAATGGAAGGGTCGGGACCACAATACCCCTATTGCTTTCCAACTTGGGTTATCCCCCTTA
JMFF034K18+ AAATGGAAGGGTCGGGACCACAATA-CCCTATTGCTTTCCAACTTGGGTTATCCCCCTTA
JMFF010B16+ AAATGGAAGGGTCGGGACCACAATACCCCTATTGCTTTCCAACTTGGGTTATCCCCCTTA
                      ____________________________________________________________
consensus AAATGGAAGGGTCGGGACCACAATACCCCTATTGCTTTCCAACTTGGGTTATCCCCCTTA
 
. : . : . : . : . : . :
JMSF048A14+ TCATCAACCGAAGTGAAGAATACGAGGAGAACCAAAGCTTTCATGGCCGTGAAAAAATTT
JMFF029G05+ TCATCAACCGAAGTGAAGAATACGAGGAGAACCAAAGCTTTCATGGCCGTGAAAAAATTT
JMFF034K18+ TCATCAACCGAAGTGAAGAATACGAGGAGAACCAAAGCTTTCATGGCCGTGAAAAAATTT
JMFF010B16+ TCATCAACCGAAGTGAAGAATACGAGGAGAACCAAAGCTTTCATGGCCGTGAAAAAATTT
                      ____________________________________________________________
consensus TCATCAACCGAAGTGAAGAATACGAGGAGAACCAAAGCTTTCATGGCCGTGAAAAAATTT
 
. : . : . : . : . : . :
JMSF048A14+ CTGATGAATTGCAGACTGCTGGTGGCCCATGAATGAACTATACGTTCTCTCTTCTTCTGA
JMFF029G05+ CTGATGAATTGCAGACTGCTGGTGGCCCATGAATGAACTATACGTTCTCTCTTCTTCTGA
JMFF034K18+ CTGATGAATTGCAGACTGCTGGTGGCCCATGAATGAACTATACGTTCTCTCTTCTTCTGA
JMFF010B16+ CTGATGAATTGCAGACTGCTGGTGGCCCATGAATGAACTATACGTTCTCTCTTCTTCTGA
                      ____________________________________________________________
consensus CTGATGAATTGCAGACTGCTGGTGGCCCATGAATGAACTATACGTTCTCTCTTCTTCTGA
 
. : . : . : . : . : . :
JMSF048A14+ GAAATCTCAGGGAAGCGTAGCAAAAAGGGAAACTGGGTTGACAAGCTTCCCTTTCCACAC
JMFF029G05+ GAAATCTCAGGGAAGCGTAGCAAAAAGGGAAACTGGGTTGACAAGCTTCCCTTTCCACAC
JMFF034K18+ GAAATCTCAGGGAAGCGTAGCAAAAAGGGAAACTGGGTTGACAAGCTTCCCTTTCCACAC
JMFF010B16+ GAAATCTCAGGGAAGCGTAGCAAAAAGGGAAACTGGGTTGACAAGCTTCCCTTTCCACAC
                      ____________________________________________________________
consensus GAAATCTCAGGGAAGCGTAGCAAAAAGGGAAACTGGGTTGACAAGCTTCCCTTTCCACAC
 
. : . : . : . : . : . :
JMSF048A14+ AGTAACAATGTTCCAATCCTCGTTGACAGAAACCATAGCAGCAGCAGCAATGAATTCAGC
JMFF029G05+ AGTAACAATGTTCCAATCCTCGTTGACAGAAACCATAGCAGCAGCAGCAATGAATTCAGC
JMFF034K18+ AGTAACAATGTTCCAATCCTCGTTGACAGAAACCATAGCAGCAGCAGCAATGAATTCAGC
JMFF010B16+ AGTAACAATGTTCCAATCCTCGTTGACAGAAACCATAGCAGCAGCAGCAATGAATTCAGC
                      ____________________________________________________________
consensus AGTAACAATGTTCCAATCCTCGTTGACAGAAACCATAGCAGCAGCAGCAATGAATTCAGC
 
. : . : . : . : . : . :
JMSF048A14+ TTAGGATGTTTCATTCTCTGGTTTATAACCCACGCCACCTGG
JMFF029G05+ TTAGGATGTTTCATTCTCTGGTTTATAACCCACGCCACCTGGTGGGGAGTTCCGGTGGAG
JMFF034K18+ TTAGGATGTTTCATTCTCTGGTTTATAACCCACGCCACCTGGTGGGGAGTTCCGGTGGAG
JMFF010B16+ TTAGGATGTTTCATTCTCTGGTTTATAACCCACGCCACCTGGTGGGGAGTTCCGGTGGAG
                      ____________________________________________________________
consensus TTAGGATGTTTCATTCTCTGGTTTATAACCCACGCCACCTGGTGGGGAGTTCCGGTGGAG
 
. : . : . : . : . : . :
JMFF029G05+ GCGGCTGAAGTTTGGAAGAAATTAGTGACAGATGCATCTGTGGTTTCTGGAAGAGCTTCA
JMFF034K18+ GCGGCTGAAGTTTGGAAGAAATTAGTGACAGATGCATCTGTGGTTTCTGGAAGAGCTTCA
JMFF010B16+ GCGGCTGAAGTTTGGAAGAAATTAGTGACAGATGCATCTGTGGTTTCTGGAAGAGCTTCA
                      ____________________________________________________________
consensus GCGGCTGAAGTTTGGAAGAAATTAGTGACAGATGCATCTGTGGTTTCTGGAAGAGCTTCA
 
. : . : . : . : . : . :
JMFF029G05+ TTAATGGCGGGCAGAAAGGTATTGCATAAAGCACTCAGAGTCTCCATCTGTGAAGGAGAC
JMFF034K18+ TTAATGGCGGGCAGAAAGGTATTGCATAAAGCACTCAGAGTCTCCATCTGTGAAGGAGAC
JMFF010B16+ TTAATGGCGGGCAGAAAGGTATTGCATAAAGCACTCAGAGTCTCCATCTGTGAAGGAGAC
                      ____________________________________________________________
consensus TTAATGGCGGGCAGAAAGGTATTGCATAAAGCACTCAGAGTCTCCATCTGTGAAGGAGAC
 
. : . : . : . : . : . :
JMFF029G05+ AGTGTTTTGGTAGCGGTATTGTTCTCCATTTTTCTGTGAAGTGAATATTAATTCTGCATC
JMFF034K18+ AGTGTTTTGGTAGCGGTATTGTTCTCCATTTTTCTGTGAAGTGAATATTAATTCTGCATC
JMFF010B16+ AGTGTTTTGGTAGCGGTATTGTTCTCCATTTTTCTGTGAAGTGAATATTAATTCTGCATC
                      ____________________________________________________________
consensus AGTGTTTTGGTAGCGGTATTGTTCTCCATTTTTCTGTGAAGTGAATATTAATTCTGCATC