Previous Contig 000473:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009C01Sequence612000473 (4)gb:AB006698_15098732e-18Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19.>gb:AY070105_1566688008587 (4)pir|T04534|T045341e-09hypothetical protein F28J12.40 - Arabidopsis thaliana>gb:ATCHRIV48_1545639 Arabi
JMFF010D17Sequence271000473 (4)691008587 (4)pir|T04534|T045344e-30hypothetical protein F28J12.40 - Arabidopsis thaliana>gb:ATCHRIV48_1545639 Arabi
JMFF022H09Sequence452000473 (4)gb:AB006698_15098737e-15Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19.>gb:AY070105_1566699008587 (4)pir|T04534|T045347e-31hypothetical protein F28J12.40 - Arabidopsis thaliana>gb:ATCHRIV48_1545639 Arabi
JMSF051B08Sequence693000473 (4)gb:AB006698_15098732e-25Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19.>gb:AY070105_1566797008587 (4)pir|T04534|T045346e-43hypothetical protein F28J12.40 - Arabidopsis thaliana>gb:ATCHRIV48_1545639 Arabi

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051B08+ GCTCGGCA
                      ____________________________________________________________
consensus GCTCGGCA
 
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JMSF051B08+ GCTCGATGCGGAGGAGCTTGATTTCGTTAAAATCTTCAAGACCTGAGTGGGGGAGTGGTG
                      ____________________________________________________________
consensus GCTCGATGCGGAGGAGCTTGATTTCGTTAAAATCTTCAAGACCTGAGTGGGGGAGTGGTG
 
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JMSF051B08+ GGTCACGGAGCTCTGGTCAAACTCGCCGTCTTCGAGCGCCGACGACGCGGCGACGCGCCT
JMFF009C01+ GGCGACGCGCCT
                      ____________________________________________________________
consensus GGTCACGGAGCTCTGGTCAAACTCGCCGTCTTCGAGCGCCGACGACGCGGCGACGCGCCT
 
. : . : . : . : . : . :
JMSF051B08+ CGGGGAGGCGGAGATGAATTGGGAGAGAGACTGGAAAGGCTTGAGCAGGCCCGTGAACAC
JMFF009C01+ CGGGGAGGCGGAGATGAATTGGGAGAGAGACTGGAAAGGCTTGAGCAGGCCCGTGAACAC
                      ____________________________________________________________
consensus CGGGGAGGCGGAGATGAATTGGGAGAGAGACTGGAAAGGCTTGAGCAGGCCCGTGAACAC
 
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JMSF051B08+ GAGGCGGAGGATGGAGGAGATGGGGTGCCGAGACTTGTCAGACGCGGCCGCCGCCGCCGC
JMFF009C01+ GAGGCGGAGGATGGAGGAGATGGGGTGCCGAGACTTGTCAGACGCGGCCGCCGCCGCCGC
                      ____________________________________________________________
consensus GAGGCGGAGGATGGAGGAGATGGGGTGCCGAGACTTGTCAGACGCGGCCGCCGCCGCCGC
 
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JMSF051B08+ GGCCGACGACGACGGTGAAGAACCGTCTTCGTCGGAGATAACGCAGTCAACCCGAACGAC
JMFF022H09+ TCGTCGGAGATAACGCAGTCAACCCGAACGAC
JMFF009C01+ GGCCGACGACGACGGTGAAGAACCGTCTTCGTCGGAGATAACGCAGTCAACCCGAACGAC
                      ____________________________________________________________
consensus GGCCGACGACGACGGTGAAGAACCGTCTTCGTCGGAGATAACGCAGTCAACCCGAACGAC
 
. : . : . : . : . : . :
JMSF051B08+ GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
JMFF022H09+ GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
JMFF009C01+ GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
                      ____________________________________________________________
consensus GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
 
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JMSF051B08+ GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
JMFF022H09+ GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
JMFF010D17+ CGAGCAGGATGAGAGAATCCGGCAGCCG
JMFF009C01+ GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
                      ____________________________________________________________
consensus GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
 
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JMSF051B08+ GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
JMFF022H09+ GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
JMFF010D17+ GTNGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
JMFF009C01+ GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
                      ____________________________________________________________
consensus GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
 
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JMSF051B08+ CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
JMFF022H09+ CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
JMFF010D17+ CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
JMFF009C01+ CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
                      ____________________________________________________________
consensus CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
 
. : . : . : . : . : . :
JMSF051B08+ ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
JMFF022H09+ ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
JMFF010D17+ ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
JMFF009C01+ ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
                      ____________________________________________________________
consensus ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
 
. : . : . : . : . : . :
JMSF051B08+ TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
JMFF022H09+ TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
JMFF010D17+ NTGAAGAAATGGGCTTTATGGATNTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
JMFF009C01+ TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
                      ____________________________________________________________
consensus TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
 
. : . : . : . : . : . :
JMSF051B08+ TAGAGAGAGAGAGGTGTGAAGTCT
JMFF022H09+ TAGAGAGAGAGAGGTGTGAAGTCTGGAGATGAAAACACAGTTCTTGCAGTGATAAAGTAT
JMFF009C01+ TAGAGAGAGAGAGGTGTGAAGTCTGGAGATGAAAACACAGTTCTTGCAGTGATAAAGTAT
                      ____________________________________________________________
consensus TAGAGAGAGAGAGGTGTGAAGTCTGGAGATGAAAACACAGTTCTTGCAGTGATAAAGTAT