Previous Contig 000405:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007O09Sequence324000405 (4)278010391 (2)
JMFF016D21Sequence317000405 (4)293000405 (4)
JMFF044B14Sequence649000405 (4)gb:AF428307_17992371e-22Arabidopsis thaliana At1g70780/F5A18_4 mRNA, complete cds.646010391 (2)pir|D96732|D967329e-11hypothetical protein F15H11.3 [imported] - Arabidopsis thaliana>gb:AE005173_8946

Alignment

This contig is upended


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JMFF044B14+ AATCAAACCATTCGAATAACCTAGGAAACTCCGAAACCAAATAAAAAGT
                      ____________________________________________________________
consensus AATCAAACCATTCGAATAACCTAGGAAACTCCGAAACCAAATAAAAAGT
 
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JMFF044B14+ TTCGTAAAAGTACCTTCAGTTGCAGCGTTGGGGCAATAGAGTACGAAGTTGTTGAGATCC
                      ____________________________________________________________
consensus TTCGTAAAAGTACCTTCAGTTGCAGCGTTGGGGCAATAGAGTACGAAGTTGTTGAGATCC
 
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JMFF044B14+ GATCCGAGAATCGGGAGCCTCCCCTCGCGAGCGTAGGATTTGAGGGCGGTATCGATCACC
                      ____________________________________________________________
consensus GATCCGAGAATCGGGAGCCTCCCCTCGCGAGCGTAGGATTTGAGGGCGGTATCGATCACC
 
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JMFF044B14+ GCGGCGACGAGATCGTTCTCGCTCGCCACGAACCGGATCGGGCCGGCGCTTCCCAGCACG
                      ____________________________________________________________
consensus GCGGCGACGAGATCGTTCTCGCTCGCCACGAACCGGATCGGGCCGGCGCTTCCCAGCACG
 
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JMFF044B14+ GTGATGCTCACCAGGAGCCGCTTTCCGGCCGCCGGATTCTTCTTCGCCTTGCAAACAAAC
                      ____________________________________________________________
consensus GTGATGCTCACCAGGAGCCGCTTTCCGGCCGCCGGATTCTTCTTCGCCTTGCAAACAAAC
 
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JMFF044B14+ ATCATCTTCTTCGCTAATAATAATAATAATCAAACAAAACGCCTTTTTTTTTCCAAGAAA
                      ____________________________________________________________
consensus ATCATCTTCTTCGCTAATAATAATAATAATCAAACAAAACGCCTTTTTTTTTCCAAGAAA
 
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rJMFF016D21- AAATCAAGAACGAAAAGAACACGAATTTGAGGAAATGAGGAATC
JMFF044B14+ ACAGGAGAATTGGGTAAAATCAAGAACGAAAAGAACACGAATTTGAGGAAATGAGGAATC
                      ____________________________________________________________
consensus ACAGGAGAATTGGGTAAAATCAAGAACGAAAAGAACACGAATTTGAGGAAATGAGGAATC
 
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rJMFF016D21- AAATCAAATAAAACAAAAAACCGAAAACGAGGATTATTGGCCTAAGGGTCTACGCCGAGG
JMFF044B14+ AAATCAAATAAAACAAAAAACCGAAAACGAGGATTATTGGCCTAAGGGTCTACGCCGAGG
                      ____________________________________________________________
consensus AAATCAAATAAAACAAAAAACCGAAAACGAGGATTATTGGCCTAAGGGTCTACGCCGAGG
 
. : . : . : . : . : . :
rJMFF016D21- CAGCGGTAGTACCAGGCTTGCTTGCAAGATCCAAAGGAGAAAGAAGAAGAAGAAGAAGAA
JMFF044B14+ CAGCGGTAGTACCAGGCTTGCTTGCAAGATCCAAAGGAGAAAGAAGAAGAAGAAGAAGAA
                      ____________________________________________________________
consensus CAGCGGTAGTACCAGGCTTGCTTGCAAGATCCAAAGGAGAAAGAAGAAGAAGAAGAAGAA
 
. : . : . : . : . : . :
rJMFF016D21- AGAGAGATTCCCCTTCTTGGAGAAGACGACAAGAAGGAGATCATCAACAAATTACTCAGA
JMFF044B14+ AGAGAGATTCCCCTTCTTGGAGAAGACGACAAGAAGGAGATCATCAACAAATTACTCAGA
JMFF016D21+ CCCCTTCTTGGAGAAGACGACAAGAAGGAGATCATCAACAAATTACTCAGA
JMFF007O09+ CCCCTTCTTGGAGAAGACGACAAGAAGGAGATCATCAACAAATTACTCAGA
                      ____________________________________________________________
consensus AGAGAGATTCCCCTTCTTGGAGAAGACGACAAGAAGGAGATCATCAACAAATTACTCAGA
 
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rJMFF016D21- AGTTCCACCATTCACGAACAATGCGAAGAATTGAGGGATGAAAAAC-GGGAGGATTGAGC
JMFF044B14+ AGTTCCACCATTCACGAACAATGCGAAGAATTGAGGGATGAAAAACNGGGAGGATTGAGC
JMFF016D21+ AGTTCCACCATTCACGAACAATGCGAAGAATTGAGGGATGAAAAAC-GGGAGGATTGAGC
JMFF007O09+ AGTTCCACCATTCACGAACAATGCGAAGAATTGAGGGATGAAAAAC-GGGAGGATTGAGC
                      ____________________________________________________________
consensus AGTTCCACCATTCACGAACAATGCGAAGAATTGAGGGATGAAAAAC-GGGAGGATTGAGC